Sequence
atgc intronic sequence ATGC exonic sequencegtaagttagaaactgcttctgaaaagaatagagctgtaatttgtttcttaatatgcctaatctgacctgattttttatgtttctcctacaacacttattccagATTGCTTGAAAAAGATCCATTCCATATGAAATGTACCTTAGTGCATTTAGCAGCTGCTATGGAGCTTGGACATTCAAATGAACTCTATCTTATGGCATGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g01170.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os03g13370.1 (Oryza sativa), 3'ss of exon 8
gtaagttagaaactgcttctgaaaagaatagagctgtaatttgtttcttaatatgcctaatctgacctgattttttatgtttctcctacaacacttattccagATTGCTTGAAAAAGATCCATTCCATATGAAATGTACCTTAGTGCATTTAGCAGCTGCTATGGAGCTTGGACATTCAAATGAACTCTATCTTATGGCATGC
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gtaagttggtaaatgattc-------attgtcggtaca-tatgtttcct--------tgatcaatattggtttatcattcttgtgatgctatatgtgcctcagGTTACTTGAAAGGGACCCTTTTCATTTGAAATGCACGTTAGTTCATTTGGCAGCTGCAATGGAGCTTGGCCATTCAAATGACCTTTATATTTTGGCCTGC
upper sequence: Vv19s0014g01170.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA06G32850.1 (Glycine max), 3'ss of exon 7
-------------gtaagttagaaactgct-tctgaaaagaatagagctgtaatttgtttcttaatatgcctaatctgacctgattttttatgtttctcctac------------aacactt--attccagATTGCTTGAAAAAGATCCATTCCATATGAAATGTACCTTAGTGCATTTAGCAGCTGCTATGGAGCTTGGACATTCAAATGAACTCTATCTTATGGCATGC
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gtaagttgtggatctaatctggtgactgaagtgagggtgcgatacaactctggcttttggcttcattcactgtccccactcctttcttctctctctctcttcctgacttaccttaaataattctgttacagTTTGCTTGAGAAGGATCTTTTCCATCTAAAGACTACGCTAGTACATCTGGCAGCTGCTGTGGAGCTTGGGCATTCAAATGAACTCTATCTGATGTCATGC
upper sequence: Vv19s0014g01170.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA12G25700.1 (Glycine max), 3'ss of exon 7
-------------gtaagttagaaactgct-tctgaaaagaatagagctgtaatttgtttcttaatatgc--------ctaatctgacctgattttttatgtttctcc------tacaacact-tattccagATTGCTTGAAAAAGATCCATTCCATATGAAATGTACCTTAGTGCATTTAGCAGCTGCTATGGAGCTTGGACATTCAAATGAACTCTATCTTATGGCATGC
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gtaagttgtggatctaatctggcaactgaagtgagagtgcaatacaactctggcttttggcatcattcactgtccccactactttcttctgtctctctctctttcttcctgacttaaataattctgttacagTTTGCTTGAGAAGGATCTTTTCCATCTAAAGACTACGTTAGTACATCTGGCAGCTGCTGTGGAGCTTGGGCATTCAAATGAACTCTATCTGATGTCATGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taatatgcctaatctgacctgattttttatgtttctcctacaacacttattccagATTGCTTGAAAAAGATCCATTCCATATGAAATGTACCTTAGTGCATTTAGCAGCTGCTATGGAGCTTGGACATTCAAATGAACTCTATCTTATGGCATGC
cttattcc CT-rich tract
tgattttttatgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagttagaaactgcttctgaaaagaatagagctgtaatttgtttcttaatatgcctaatctgacctgattttttatgtttctcctacaacacttattccagATTGCTTGAAAAAGATCCATTCCATATGAAATGTACCTTAGTGCATTTAGCAGCTGCTATGGAGCTTGGACATTCAAATGAACTCTATCTTATGGCATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT