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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttaagtgattgatattgaagtttttaaattaccattttgacctgtgaatttaaattgaaaaatgtttttacttgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGCATTGGCCATCAAAATGTTTGATCATCTCATGTTTAGTCTCTCGGAACA

Basic information

species Vitis vinifera
transcript Vv18s0122g01190.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30135931|gb|CB921269.1|CB921269
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|351049301|gb|FQ429044.1|FQ429044
EST:     CCTCTCCGAGGTGAATGATCAGGAGGATGACGA-GAATGGCAGTGAAGAG                         GAGGAAGATGATGGGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCACATG
genomic: CCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGA-TGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|71872246|gb|DT021301.1|DT021301
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|71866454|gb|DT015509.1|DT015509
EST:     CCCCCTC-GAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGACGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|71870392|gb|DT019447.1|DT019447
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|18458654|gb|BM436932.1|BM436932
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|71871903|gb|DT020958.1|DT020958
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGACGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|110422203|gb|EC988518.1|EC988518
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|349812463|gb|FQ407082.1|FQ407082
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAAAG                         GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|77587638|gb|DV222996.1|DV222996
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|349812462|gb|FQ407081.1|FQ407081
EST:     CCCTCTCCGAGGTGAATGATCACGAGGATGACTAAGATGGCAGTGAAGAG                         GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|349808030|gb|FQ402421.1|FQ402421
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGACGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|71870289|gb|DT019344.1|DT019344
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAC                         GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|71875149|gb|DT024204.1|DT024204
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|71872390|gb|DT021445.1|DT021445
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|30321835|gb|CD005097.1|CD005097
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|110378901|gb|EC944058.1|EC944058
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGACGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|30136340|gb|CB921678.1|CB921678
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAAAC                         GAGGAAGATGATGAGTAANATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|71870838|gb|DT019893.1|DT019893
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|37188038|gb|CF607389.1|CF607389
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGACGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATG
EST: gi|110701263|gb|EE078641.1|EE078641
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAAATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|110359145|gb|EC920159.1|EC920159
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|71877377|gb|DT026432.1|DT026432
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|110727673|gb|EE104704.1|EE104704
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|27586818|gb|CB009513.1|CB009513
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|30125574|gb|CB910913.1|CB910913
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|71872295|gb|DT021350.1|DT021350
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGACGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|71877289|gb|DT026344.1|DT026344
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|77584467|gb|DV221302.1|DV221302
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|71867293|gb|DT016348.1|DT016348
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|71879402|gb|DT028457.1|DT028457
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGACGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|349812002|gb|FQ410799.1|FQ410799
EST:     CCCTCTCCGAGGTGAATGATCANGAGGATGACGAAGATGGCGGTGAAGAG                         GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|30135991|gb|CB921329.1|CB921329
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|71873912|gb|DT022967.1|DT022967
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|110688346|gb|EE066794.1|EE066794
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGTAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|349822310|gb|FQ412574.1|FQ412574
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGACGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGAAG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|110725319|gb|EE101688.1|EE101688
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGTAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|77579649|gb|DV218677.1|DV218677
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGACGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
EST: gi|30125704|gb|CB911043.1|CB911043
EST:     CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAG                         GAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG
genomic: CCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGgtttgtttaa ... tgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaccattttgacctgtgaatttaaattgaaaaatgtttttacttgccttgcagGAGGAAGATGATGAGTAAAATTTGCTGACGAGGGCAGTGTGCGTGCAGATGCATTGGCCATCAAAATGTTTGATCATCTCATGTTTAGTCTCTCGGAACA
       ttttgac  putative branch site (score: 3)
                                     tttttacttgcctt  putative PPT
                 tgaatttaaattgaaa  TA-rich tract