Sequence
atgc intronic sequence ATGC exonic sequencegtgagtttcttcactgaaaattttccaatattgtgttttaaatcttactattaattaagttgttgtatagGTACATTTAGCCCCTGGAAGTAAGTTCAACTTCCAAAAGTACATCAAAAGATCCTTGGAAGATGACTTCAAGGTAGTTGTGGGAATCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0122g00910.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA06G01800.1 (Glycine max), 3'ss of exon 7
---gtgagtttcttcactgaaaattttccaata---ttgtgttttaaatcttact-attaattaa-gttgttg-------------tatagGTACATTTAGCCCCTGGAAGTAAGTTCAACTTCCAAAAGTACATCAAAAGATCCTTGGAAGATGACTTCAAGGTAGTTGTGGGAATCAG
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gttagtagttttgacaatgcaacttcagtaatatgcttgcgctgtttgtctttttcattaactaatgttaatgcccccttcacttttgtagGTTCATTTAGCACCGGGAAGTAAGTTTGATTTTCAAAAATATATCAAGAGGTCATTAGAAGATGACTTTAAGGTAGTTGTAGGAATCAG
upper sequence: Vv18s0122g00910.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA04G01710.1 (Glycine max), 3'ss of exon 8
---gtgagtttcttcactgaaaattttccaata---ttgtgtt-ttaaatcttactattaattaagttg--------------ttgtatagGTACATTTAGCCCCTGGAAGTAAGTTCAACTTCCAAAAGTACATCAAAAGATCCTTGGAAGATGACTTCAAGGTAGTTGTGGGAATCAG
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gttagtagttttggcaatgcaacttcagtaatatgcttgcactgtttgtctttatcattaactaaggttaatgcccccttcatttttgcagGTTCATTTAGCACCGGGAAGTAAGTTTGATTTTCAAAAATATATCAAGAGGTCATTAGAAGATGACTTTAAGGTAGTTGTAGGAATCAG
upper sequence: Vv18s0122g00910.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT2G33670.1 (Arabidopsis thaliana), 3'ss of exon 7
-----------------------gtgagtttcttcactgaaaattttccaatattgtgttttaaatcttactattaattaagttgttgtatagGTACATTTAGCCCCTGGAAGTAAGTTCAACTTCCAAAAGTACATCAAAAGATCCTTGGAAGATGACTTCAAGGTAGTTGTGGGAATCAG
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gtaagttccttgagattatgcaaaaccattctttaattaatttctccccaaaacattgtttgagatatgtttccaaaatcctcggttacttagGTCCATTTGGCACCGGGTATGAAGTTTAATTTCCAAAAATACATCAAAAGATCATTGGAAGACGACTTCAAGGTAGTCGTGGGAATAAG
upper sequence: Vv18s0122g00910.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G42560.1 (Arabidopsis thaliana), 3'ss of exon 7
----gtgagtttcttcactgaa--aattttccaatattgtgtt-ttaaatcttactattaattaagttgttgtatagGTACATTTAGCCCCTGGAAGTAAGTTCAACTTCCAAAAGTACATCAAAAGATCCTTGGAAGATGACTTCAAGGTAGTTGTGGGAATCAG
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gtgagtgcattaatatcttacattaattctccattaatatccaattgtttgttgctctaaaaccctatgt-atttagGTTCATTTGGCACCTGGTATGAAGTTTGATTTTCAAAAGTACATCAAAAGATCTTTGGAAGACGACTTCAAGGTGGTTGTAGGAATAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaaaattttccaatattgtgttttaaatcttactattaattaagttgttgtatagGTACATTTAGCCCCTGGAAGTAAGTTCAACTTCCAAAAGTACATCAAAAGATCCTTGGAAGATGACTTCAAGGTAGTTGTGGGAATCAG
tattaat putative branch site (score: 2)
aatattgtgttttaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtttcttcactgaaaattttccaatattgtgttttaaatcttactattaattaagttgttgtatagGTACATTTAGCCCCTGGAAGTAAGTTCAACTTCCAAAAGTACATCAAAAGATCCTTGGAAGATGACTTCAAGGTAGTTGTGGGAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG