1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gttgagtattggcctaacaagcacctttgttggtttaaatttcatctttgtacatgatatctctagtttactttggagcttgtgctgccttcctgcacagATTCCAAAGAAAGGAAAAATTTACTCAGTAAATGAAGGAAACACAAAGAATTGGGATGCTCCAACAGCCAA
species | Vitis vinifera |
transcript | Vv18s0072g00770.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTTGATCCCATCACTTGGGGGAGTTCATACTTACTCACCCAAACATTAAG ATTCCAAAGAAAGGAAAAATTTACTCCAGTAAATEST: gi|32247391|gb|CD713210.1|CD713210
genomic: CTTGATCC-ATCACTTGGGG-AGTTCATACTTACTCACCCAAACATTAAGgtaagattta ... tcctgcacagATTCCAAAGAAAGGAAAAATTTACTC-AGTAAAT
EST: CCCTTGATCCATCACTTGGGGAGTTCATACTTACTCACCCAAACATTAAG ATTCCAAAGAAAGGAAAAATTTACTCAGTAAATGAAGGAAACACAAAGAATEST: gi|32271549|gb|CD720708.1|CD720708
genomic: CCCTTGATCCATCACTTGGGGAGTTCATACTTACTCACCCAAACATTAAGgtaagattta ... tcctgcacagATTCCAAAGAAAGGAAAAATTTACTCAGTAAATGAAGGAAACACAAAGAAT
EST: CCCTTGATCCATCACTTGGGGAGTTCATACTTACTCACCCAAACATTAAG ATTCCAAAGAAAGGAAAAATTTACTCAGTAAATGAAGGAAACACAAAGAATEST: gi|32267853|gb|CD717012.1|CD717012
genomic: CCCTTGATCCATCACTTGGGGAGTTCATACTTACTCACCCAAACATTAAGgtaagattta ... tcctgcacagATTCCAAAGAAAGGAAAAATTTACTCAGTAAATGAAGGAAACACAAAGAAT
EST: CCCTTGATCCATCACTTGGGGAGTTCATACTTACTCACCCAAACATTAAG ATTCCAAAGAAAGGAAAAATTTACTCAGTAAATGAAGGAAACACAAAGAATEST: gi|32270796|gb|CD719955.1|CD719955
genomic: CCCTTGATCCATCACTTGGGGAGTTCATACTTACTCACCCAAACATTAAGgtaagattta ... tcctgcacagATTCCAAAGAAAGGAAAAATTTACTCAGTAAATGAAGGAAACACAAAGAAT
EST: CCCTTGATCCATCACTTGGGGAGTTCATACTTACTCACCCAAACATTAAG ATTCCAAAGAAAGGAAAAATTTACTCAGTAAATGAAGGAAACACAAAGAATEST: gi|110361485|gb|EC924959.1|EC924959
genomic: CCCTTGATCCATCACTTGGGGAGTTCATACTTACTCACCCAAACATTAAGgtaagattta ... tcctgcacagATTCCAAAGAAAGGAAAAATTTACTCAGTAAATGAAGGAAACACAAAGAAT
EST: CCCTTGATCCATCACTTGGGGAGTTCATACTTACTCACCCAAACATTAAG ATTCCAAAGAAAGGAAAAATTTACTCAGTAAATGAAGGAAACACAAAGAATEST: gi|30324923|gb|CD008185.1|CD008185
genomic: CCCTTGATCCATCACTTGGGGAGTTCATACTTACTCACCCAAACATTAAGgtaagattta ... tcctgcacagATTCCAAAGAAAGGAAAAATTTACTCAGTAAATGAAGGAAACACAAAGAAT
EST: CCCTTGATCCATCACTTGGGGAGTTCATACTTACTCACCCAAACATTAAG ATTCCAAAGAAAGGAAAAATTTACTCAGTAAATGAAGGAAACACAAAGAATEST: gi|32270921|gb|CD720080.1|CD720080
genomic: CCCTTGATCCATCACTTGGGGAGTTCATACTTACTCACCCAAACATTAAGgtaagattta ... tcctgcacagATTCCAAAGAAAGGAAAAATTTACTCAGTAAATGAAGGAAACACAAAGAAT
EST: CCCTTGATCCATCACTTGGGGAGTTCATACTTACTCACCCAAACATTAAG ATTCCAAAGAAAGGAAAAATTTACTCAGTAAATGAAGGAAACACAAAGAATEST: gi|110371021|gb|EC934722.1|EC934722
genomic: CCCTTGATCCATCACTTGGGGAGTTCATACTTACTCACCCAAACATTAAGgtaagattta ... tcctgcacagATTCCAAAGAAAGGAAAAATTTACTCAGTAAATGAAGGAAACACAAAGAAT
EST: CCTTGATCCATCACTTAGGGGAGTTCATACTTACTCACCCAAACATTAAG ATTCCAAAGAAAGGAAAAATTTACTCAGTAAATGAAGGAAACACAAAGAAT
genomic: CCTTGATCCATCACTT-GGGGAGTTCATACTTACTCACCCAAACATTAAGgtaagattta ... tcctgcacagATTCCAAAGAAAGGAAAAATTTACTCAGTAAATGAAGGAAACACAAAGAAT
ctttgtacatgatatctctagtttactttggagcttgtgctgccttcctgcacagATTCCAAAGAAAGGAAAAATTTACTCAGTAAATGAAGGAAACACAAAGAATTGGGATGCTCCAACAGCCAA
ctgccttcct CT-rich tract
tttacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgagtattggcctaacaagcacctttgttggtttaaatttcatctttgtacatgatatctctagtttactttggagcttgtgctgccttcctgcacagATTCCAAAGAAAGGAAAAATTTACTCAGTAAATGAAGGAAACACAAAGAATTGGGATGCTCCAACAGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - acaagca
- - - - - - - - - - - - - -tgttggt
- - - - - - - - - - - - - - - - - - - - - - - - -gtacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgcct