Sequence
atgc intronic sequence ATGC exonic sequence...gcactgtccctatattatttttaatattgaaaggtggctatctagctagttacggcctctatttttgttctattactaataaattttatgcgttatgtagCTTGAAAACACTGTGAGGTTGTTGCTGGAGCTCGAACCTGAGTCAGATCCTGTATGGCATTATTTAAATATACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0072g00720.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA20G31490.2 (Glycine max), 3'ss of exon 7
---gcactgtccctatattattt---ttaatattgaaaggtggctatctagctagttacggcctctatttttgttctattactaataaattttatgcgttatgtagCTTGAAAACACTGTGAGGTTGTTGCTGGAGCTCGAACCTGAGTCAGATCCTGTATGGCATTATTTAAATATACAG
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aatatgttaattgtatggtgattaagttagagatggattgcagcaatcttgtttctc-tggttgctagggtgattataacacttgc-----ttgttcttcatgtagCTTGAGAATACTGTGAGATTACTGTTGGATTTGGAGCCGGAGTCAGATCCAGTATGGCATTATTTGAATATACAG
upper sequence: Vv18s0072g00720.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G36120.1 (Glycine max), 3'ss of exon 7
gcactgtccctatattatttttaatat-tgaaaggtggctatctagctagttacggcctctattt-ttgttctattactaataaat-tttatgcgttatgtagCTTGAAAACACTGTGAGGTTGTTGCTGGAGCTCGAACCTGAGTCAGATCCTGTATGGCATTATTTAAATATACAG
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--attatgttaataatatggtgattaagttagagatggat-tgcagcgatcttgtttctctggttgctagggtgattataacacttgcttgttcttcatgtagCTTGAGAATACTGTGAGGTTACTGTTGGATTTGGAGCCGGAGTCAGATCCAGTGTGGCATTATTTGAATATTCAG
upper sequence: Vv18s0072g00720.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G76850.1 (Arabidopsis thaliana), 3'ss of exon 7
----gcactgtccctat-attatttttaatattgaaaggtggctatctagctagttacggcctctatttttgttctattactaataaattttatgcgttatgtagCTTGAAAACACTGTGAGGTTGTTGCTGGAGCTCGAACCTGAGTCAGATCCTGTATGGCATTATTTAAATATACAG
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ttttacattttcccagttgttgtacctactaaataaaa-tgactaaattttt--ttccagtctatttttttgtcttgatatc--tgaggtctgttcttattttagCTGGAAAACACTGTGAGGCTTTTGCTGGAGCTGGAACCCGAATCTGATCCTGTGTGGCATTATCTAAATGTTCAG
upper sequence: Vv18s0072g00720.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G21170.1 (Arabidopsis thaliana), 3'ss of exon 7
---gcactgtccctatattatttttaatattgaaaggtggctatctagctagttacggcctctatttttgttctattactaataaat-tttatgcgttatgtagCTTGAAAACACTGTGAGGTTGTTGCTGGAGCTCGAACCTGAGTCAGATCCTGTATGGCATTATTTAAATATACAG
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agactatgagtcacaagttaatgtttataataaacatt---catgtatcttgtctcc-ccattcttttcctctgcttaatgctatttgtttttgcttaatttagCTGGAAAACACTGTGAGGCTTTTGCTGGAACTGGAGCCTGAATCGGATCCTGTTTGGCATTACTTAAATGTTCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctagttacggcctctatttttgttctattactaataaattttatgcgttatgtagCTTGAAAACACTGTGAGGTTGTTGCTGGAGCTCGAACCTGAGTCAGATCCTGTATGGCATTATTTAAATATACAG
tactaat putative branch site (score: 1)
tctatttttgttctat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcactgtccctatattatttttaatattgaaaggtggctatctagctagttacggcctctatttttgttctattactaataaattttatgcgttatgtagCTTGAAAACACTGTGAGGTTGTTGCTGGAGCTCGAACCTGAGTCAGATCCTGTATGGCATTATTTAAATATACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- -ctgtccc
- - - - - - - - - - - - - - - - - tggctat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaat