1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tgatgattttttatctttgacaaagtattgccatgataaccattgctgagagcaataagttgatttcaaaacaataatatttggttcctgattggtgcagAGGGAGTATGAAGAGTTCAAAATTCGGATAAATGCATTGGTTTCTATGGCCCAGAAGGTCCCCGAGGAAGGTTGGACAATGCAGGATGGGACTCCATGGC
species | Vitis vinifera |
transcript | Vv18s0072g00370.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGAAAGACAAAGTGCATCCGGAGTTTGTTAGGGAACGTCGTGCAATGAAG AGGGAGTATGAAGAGTTCAAAATTCGGATAAATGCATTGGTTTCTATGGCCEST: gi|351026053|gb|FQ428065.1|FQ428065
genomic: TGAAAGACAAAGTGCATCCGGAGTTTGTTAGGGAACGTCGTGCAATGAAGgttaacacct ... attggtgcagAGGGAGTATGAAGAGTTCAAAATTCGGATAAATGCATTGGTTTCTATGGCC
EST: TGAAAGACAAAGTGCATCCGGAGTTTGTTAGGGAACGTCGTGCAATGAAG AGGGAGTATGAAGAGTTCAAAATTCGGATAAATGCATTGGTTTCTATGGCCEST: gi|351025958|gb|FQ427970.1|FQ427970
genomic: TGAAAGACAAAGTGCATCCGGAGTTTGTTAGGGAACGTCGTGCAATGAAGgttaacacct ... attggtgcagAGGGAGTATGAAGAGTTCAAAATTCGGATAAATGCATTGGTTTCTATGGCC
EST: TGAAAGACAAAGTGCATCCGGAGTTTGTTAGGGAACGTCGTGCAATGAAG AGGGAGTATGAAGAGTTCAAAATTCGGATAAATGCATTGGTTTCTATGGCCEST: gi|351024090|gb|FQ423513.1|FQ423513
genomic: TGAAAGACAAAGTGCATCCGGAGTTTGTTAGGGAACGTCGTGCAATGAAGgttaacacct ... attggtgcagAGGGAGTATGAAGAGTTCAAAATTCGGATAAATGCATTGGTTTCTATGGCC
EST: TGAAAGACAAAGTGCATCCGGAGTTTGTTAGGGAACGTCGTGCAATGAAG AGGGAGTATGAAGAGTTCAAAATTCGGATAAATGCATTGGTTTCTATGGCCEST: gi|349826424|gb|FQ418515.1|FQ418515
genomic: TGAAAGACAAAGTGCATCCGGAGTTTGTTAGGGAACGTCGTGCAATGAAGgttaacacct ... attggtgcagAGGGAGTATGAAGAGTTCAAAATTCGGATAAATGCATTGGTTTCTATGGCC
EST: TGAAAGACAAAGTGCATCCGGAGTTTGTTAGGGAACGTCGTGCAATGAAG AGGGAGTATGAAGAGTTCAAAATTCGGATAAATGCATTGGTTTCTATGGCC
genomic: TGAAAGACAAAGTGCATCCGGAGTTTGTTAGGGAACGTCGTGCAATGAAGgttaacacct ... attggtgcagAGGGAGTATGAAGAGTTCAAAATTCGGATAAATGCATTGGTTTCTATGGCC
ctgagagcaataagttgatttcaaaacaataatatttggttcctgattggtgcagAGGGAGTATGAAGAGTTCAAAATTCGGATAAATGCATTGGTTTCTATGGCCCAGAAGGTCCCCGAGGAAGGTTGGACAATGCAGGATGGGACTCCATGGC
tcctgat putative branch site (score: 3)
aataagttgatttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatgattttttatctttgacaaagtattgccatgataaccattgctgagagcaataagttgatttcaaaacaataatatttggttcctgattggtgcagAGGGAGTATGAAGAGTTCAAAATTCGGATAAATGCATTGGTTTCTATGGCCCAGAAGGTCCCCGAGGAAGGTTGGACAATGCAGGATGGGACTCCATGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - gacaaag
- - - - - - - - - - - - - - - ccatgat
- - - - - - - - - - - - - - - - - - - -ccattgc
- - - - - - - - - - - - - - - - - - - - - - - - - -gcaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacaa