Sequence
atgc intronic sequence ATGC exonic sequence...tttctaaaaaatataatgtgaatcatttttatatttatgtccagtttttaccttaaccagctttgatccaactatcagacttatagttgctctattgtagGGTGGTACGGATACGGCGAATGAGAGAAGTAAATCAGGAGGCAGTTCTTCTTGCGTTGTGCTCCAAGACCTTCACAGCAAAAGCGATTATCTTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g14540.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G11950.1 (Glycine max), 3'ss of exon 7
--tttctaaaaaatataatgtgaatcatttttatatttatgtccagtttttaccttaaccagctttgatccaactatcagacttatagttgctctattgtagGGTGGTACGGATACGGCGAATGAGAGAAGTAAATCAGGAGGCAGTTCTTCTTGCGTTGTGCTCCAAGACCTTCACAGCAAAAGCGATTATCTTCAG
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aattatgtaaaactatcatgttaaaacttttgaagttt--gccaggttttagcatctagtaagatcctttgagttttgttaactattgcttttctatttcagAGTTGTTAGAATACGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACTTCCAAAGTCATCATCTTCAG
upper sequence: Vv18s0001g14540.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G25240.1 (Glycine max), 3'ss of exon 7
---tttctaaaaaatataatgtgaatcatttttatatttatgtccagtttttaccttaaccagctttgatccaactatcagacttatagttgctctattgtagGGTGGTACGGATACGGCGAATGAGAGAAGTAAATCAGGAGGCAGTTCTTCTTGCGTTGTGCTCCAAGACCTTCACAGCAAAAGCGATTATCTTCAG
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aattatgcaaaaactattatgttaaattttttgaagttt--gctaggttttagcgtctagtaaaatcctttgagctttgttaactactgtttttctttt-cagGGTTGTTAGAATACGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACTTCCAAAGTCATCATCTTCAG
upper sequence: Vv18s0001g14540.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G15220.1 (Glycine max), 3'ss of exon 6
---tttctaaaaaatataatgtgaatcatttttatatttatgtccagtttttaccttaaccagctttgatccaactatcagacttatagttgctctattgtagGGTGGTACGGATACGGCGAATGAGAGAAGTAAATCAGGAGGCAGTTCTTCTTGCGTTGTGCTCCAAGACCTTCACAGCAAAAGCGATTATCTTCAG
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taattatgcaaaactattatgttaaatattttgaagttt--gctgggttttagcatctagtaaaatcctttgagctttgttaactactgtttttctttt-cagGGTTGTTAGAATACGAAGAATGAGTGAAGTAAATCAGGAAGCTGTTCTTCTTTCAATGTGCTCCAAAACTTTTACTTCCAAAGTCATCATCTTCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161719083|gb|FC069336.1|FC069336EST: CGCCTTGCTGCTGATCCATCCACGAAACGGCCATCAACATTGACAGAAGA GGTGGTACGGATACGGCGAATGAGAGAAGTAAATCAGGAGGCAGTTCTTCT
genomic: CGCCTTGCTGCTGATCCATCCACGAAACGGCCAGCAACATTGACAGAAGAgtaattctaa ... tctattgtagGGTGGTACGGATACGGCGAATGAGAGAAGTAAATCAGGAGGCAGTTCTTCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttaccttaaccagctttgatccaactatcagacttatagttgctctattgtagGGTGGTACGGATACGGCGAATGAGAGAAGTAAATCAGGAGGCAGTTCTTCTTGCGTTGTGCTCCAAGACCTTCACAGCAAAAGCGATTATCTTCAG
ttgctct CT-rich tract
ttatagtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttctaaaaaatataatgtgaatcatttttatatttatgtccagtttttaccttaaccagctttgatccaactatcagacttatagttgctctattgtagGGTGGTACGGATACGGCGAATGAGAGAAGTAAATCAGGAGGCAGTTCTTCTTGCGTTGTGCTCCAAGACCTTCACAGCAAAAGCGATTATCTTCAG
- - -aaaaaat
- - - - - - - - - - - - - - - - - -tatgtcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ccagctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaacta