Sequence
atgc intronic sequence ATGC exonic sequence...gtgcaggtgttatctgtgcattttttgcagctgacattttcattcataagcttttcttagtaaactaaaaaaatattattttgaaatttgtttgatatagGTTAAAATGATTATGGCAACAAACCGGCCTGATGTTCTTGACCCTGCACTTCTTCGTCCTGGGCGATTAGACAGAAAGATAGAGATTCCATTGCCAAATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g13090.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA14G07750.1 (Glycine max), 3'ss of exon 7
------gtgcaggtgttatctgtgcattttttgcagctgacattttcattcataagcttttcttagtaaactaaaaaaatattattttgaaatttgtttgatatagGTTAAAATGATTATGGCAACAAACCGGCCTGATGTTCTTGACCCTGCACTTCTTCGTCCTGGGCGATTAGACAGAAAGATAGAGATTCCATTGCCAAATG
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ctggatattttggtattctctctaaaaatgattgtcctagcaaattc--taatggtgggttgacaacaa-ttaacaacattgctttctgaa---tggatgttgtagGTTAAAATGATAATGGCAACAAACCGTCCTGATGTACTGGATCCTGCTCTTCTGCGTCCTGGAAGATTAGATAGAAAAATAGAAATTCCATTGCCAAATG
upper sequence: Vv18s0001g13090.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G37220.1 (Glycine max), 3'ss of exon 7
gtgcaggtgttatc-tgtgcattttttgcag--ctgacattttcattcataagcttttcttagtaaactaaaaaaatattattttgaaatttgtttgatatagGTTAAAATGATTATGGCAACAAACCGGCCTGATGTTCTTGACCCTGCACTTCTTCGTCCTGGGCGATTAGACAGAAAGATAGAGATTCCATTGCCAAATG
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-tctggatattgtgatattctctctaaaaagaattgttctagctaattctaatggtgggttaacaactgttaacaacaatgctgtctgaatggat-gttgtaGGTTAAAATGATAATGGCAACAAACCGTCCTGATGTACTGGATCCTGCTCTTCTGCGTCCTGGAAGATTAGATAGAAAAATAGAAATTCCATTGCCAAAT-
upper sequence: Vv18s0001g13090.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA06G03230.1 (Glycine max), 3'ss of exon 7
gtgcaggtgtt-atctgtgcattttttgcagctgacattttcattcataagcttttcttagtaaactaaaaaaatattattttgaaatttgtttgatatagGTTAAAATGATTATGGCAACAAACCGGCCTGATGTTCTTGACCCTGCACTTCTTCGTCCTGGGCGATTAGACAGAAAGATAGAGATTCCATTGCCAAATG
|| | | || ||| ||||||| | ||| || || ||| | | | | | |||| | | | || | || | |||||||||||||| |||||||||||||| |||||||| ||||||||||| || || ||||||||| |||| || ||||| ||||| || || |||| ||||
gtattcttatggatatgttgattttttctacaaatgattgctgaacaaaaaatttaatggtggattcacgatgacattactgtctacatt-tctgttgtagGTTAAAATGATAATGGCAACAAACCGACCTGATGTACTTGACCCTGCTCTCCTGCGTCCTGGGAGATTGGATAGAAAAATAGAAATCCCTCTGCCTAATG
upper sequence: Vv18s0001g13090.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA04G03180.1 (Glycine max), 3'ss of exon 7
---gtgcaggtgt-tatctgtgcattttttgcagctgacattttcattcataagcttttcttagtaaactaaaaa-aatattattttgaaatttgtttgatatagGTTAAAATGATTATGGCAACAAACCGGCCTGATGTTCTTGACCCTGCACTTCTTCGTCCTGGGCGATTAGACAGAAAGATAGAGATTCCATTGCCAAATG
| | || ||| | |||| | || |||| | | | || ||| | || | | | | | | || | | || | || | |||||||||||||| |||||||||||||| |||||||| ||||||||||| || || ||||||||| |||| || ||||| ||||| || || |||| ||||
tgtattcttatggatattttgattttttctacaaatgac----tgctgaacaaaaatttaatggtggattcatgatgacactactgtctccatt-tctgctgtagGTTAAAATGATAATGGCAACAAACCGACCTGATGTACTTGACCCTGCTCTCCTGCGTCCTGGGAGATTGGATAGAAAAATAGAAATCCCTCTGCCTAATG
upper sequence: Vv18s0001g13090.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S91_182V6.1 (Physcomitrella patens), 3'ss of exon 7
----------gtgcaggtgttatctgtgcattttttgcagctgacattttcattcataagcttttcttagtaaactaaaaaaatattattttgaaatttgttt-------------gatatagGTTAAAATGATTATGGCAACAAACCGGCCTGATGTTCTTGACCCTGCACTTCTTCGTCCTGGGCGATTAGACAGAAAGATAGAGATTCCATTGCCAAATG
| | | |||| | | | | |||| || | | || || |||| | | | | ||| ||| | ||| |||| |||| || ||||| |||||||| || || ||||||||||||||||||||| | || || || || || ||||| ||||||| || |||||| | |||||||
gtgtgttaagattctgaatctatcctagtaataatagcagacactatggttactctgaaattttttgtcacgtgcatggcagccaatatcttgtctcatttttcacatgtaccgaggatacagGTAAAGATGATCATGGCAACCAATCGACCTGATGTTCTTGACCCTGCATTGCTCCGACCCGGCCGTTTAGATCGAAAGATTGAAATTCCACTACCAAATG
upper sequence: Vv18s0001g13090.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S13_419V6.1 (Physcomitrella patens), 3'ss of exon 7
------gtgcaggtgttatctgtgcattttttgcagctgacattttcattcataagcttttcttagtaaactaaaaaaatattattttgaaatttgtttgatatagGTTAAAATGATTATGGCAACAAACCGGCCTGATGTTCTTGACCCTGCACTTCTTCGTCCTGGGCGATTAGACAGAAAGATAGAGATTCCATTGCCAAATG
|| | || ||||| || | || | | | ||||| || || |||| ||| | | | || | | ||||||| || ||||| |||||||| |||||||| ||||||||||||||||| ||||| || ||||| || || || ||||||| || |||||| | |||||||
gtagacctggaaaaatt-tctgtcaatgccacgttgcc-ataatagtgatcatagattt---cgaggaaacaccgttgatagt-tgccaacatcttgtcattatagGTAAAGATGATCATGGCAACCAACCGGCCAGATGTTCTTGACCCTGCTCTTCTACGACCTGGTCGTTTGGATCGAAAGATTGAAATTCCACTACCAAATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ataagcttttcttagtaaactaaaaaaatattattttgaaatttgtttgatatagGTTAAAATGATTATGGCAACAAACCGGCCTGATGTTCTTGACCCTGCACTTCTTCGTCCTGGGCGATTAGACAGAAAGATAGAGATTCCATTGCCAAATG
tttgttt CT-rich tract
taaactaaaaaaatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgcaggtgttatctgtgcattttttgcagctgacattttcattcataagcttttcttagtaaactaaaaaaatattattttgaaatttgtttgatatagGTTAAAATGATTATGGCAACAAACCGGCCTGATGTTCTTGACCCTGCACTTCTTCGTCCTGGGCGATTAGACAGAAAGATAGAGATTCCATTGCCAAATG
-tgcaggt
- - - - - - - -gtgcatt
- - - - - - - - - - - ttttgca
- - - - - - - - - - - - - - - ctgacat
- - - - - - - - - - - - - - - - - - - - cattcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa