Sequence
atgc intronic sequence ATGC exonic sequencegttagtctgaatgatttatttattcttaaatctgaaaatatggcctgtttatgattcttgaggagaatatagatgactgggtaacataaaaattttgttaatatatgcagCCACGGGACACAAGATATGTTGCCCTTAATGATGGTCGGAAGCTCTGCCTGGAGTGTCTGGACTCTGCAATCATGGATACCAATGAATGTCAACCCCTCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g11820.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA14G08450.1 (Glycine max), 3'ss of exon 7
gttagtctgaatga--tttatttattc--ttaaatctgaaaatatggcctgtttatg--attcttgaggagaatatagatgactgggt------aacataaaaattt-tgttaatatatgcagCCACGGGACACAAGATATGTTGCCCTTAATGATGGTCGGAAGCTCTGCCTGGAGTGTCTGGACTCTGCAATCATGGATACCAATGAATGTCAACCCCTCT
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gttagtatggatggagtatatttatctgataaaatattatttgtagtcttgcctagggaaaggtggatgaacttgtacagtgcaaagtgaatagaatgtaaaattttctctcatcatatgcagTCCCAAGAGGCAGGATATATTGCTCTTAAGGATGGCCGGAAGCTCTGCTTAGAGTGTCTTGATTCTGCTATCATGGATACTAATGAATGCCAACCCCTTC
upper sequence: Vv18s0001g11820.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G36620.1 (Glycine max), 3'ss of exon 6
gttagtctgaatga--tttatttattc--ttaaat----ctgaaaatatggcct-gtttatgattcttgagga-gaatatagatgactgggtaacata-aaaattttgttaatatatgcagCCACGGGACACAAGATATGTTGCCCTTAATGATGGTCGGAAGCTCTGCCTGGAGTGTCTGGACTCTGCAATCATGGATACCAATGAATGTCAACCCCTCT
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gtcagtatggatggagtatatttatctgatcaaatattatttatagtcttgcctagggaaaggtgtatgaacttgtacagtgcaaagtgaatacaatgtaaaattttctctccacatgcagTCACAAGAGGCAGGATATATTGCTCTTAAGGATGGCCGGAAGCTCTGCTTAGAGTGTCTAGATTCTTCTATCATGGATACTAATGAATGCCAACCCCTTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttgaggagaatatagatgactgggtaacataaaaattttgttaatatatgcagCCACGGGACACAAGATATGTTGCCCTTAATGATGGTCGGAAGCTCTGCCTGGAGTGTCTGGACTCTGCAATCATGGATACCAATGAATGTCAACCCCTCT
tgttaat putative branch site (score: 3)
taacataaaaattttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagtctgaatgatttatttattcttaaatctgaaaatatggcctgtttatgattcttgaggagaatatagatgactgggtaacataaaaattttgttaatatatgcagCCACGGGACACAAGATATGTTGCCCTTAATGATGGTCGGAAGCTCTGCCTGGAGTGTCTGGACTCTGCAATCATGGATACCAATGAATGTCAACCCCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA