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...tttccaattttgtttataaagagttgactttatgcctatcaaacaaataaaataaaataaaatgaaagttgactttgtgaaataaaaatattcattgcagTTGGAGAAAAGTGCTGCCCTCTTCAGACCAAAACTAATTGTTGCTGGCGCAAGTGCCTATGCACGTCTTTATGATTATGCACGTATCCGCAAG
species | Vitis vinifera |
transcript | Vv18s0001g07960.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAATGCCATACAGATTGGATGAAAAAACTGGATATATTGACTATGACCAG TTGGAGAAAAGTGCTGCCCTCTTCAGACCAAAACTAATTGTTGCTGGCGCAEST: gi|110383662|gb|EC948045.1|EC948045
genomic: CAATGCCATACAGATTGGATGAAAAAACTGGATATATTGACTATGACCAGgtgcatttac ... ttcattgcagTTGGAGAAAAGTGCTGCCCTCTTCAGACCAAAACTAATTGTTGCTGGCGCA
EST: CAATGCCATACAGATTGGATGAAAAAACTGGATATATTGACTATGACCAG TTGGAGAAAAGTGCTGCCCTCTTCAGACCAAAACTAATTGTTGCTGGCGCAEST: gi|352781776|gb|FQ469074.1|FQ469074
genomic: CAATGCCATACAGATTGGATGAAAAAACTGGATATATTGACTATGACCAGgtgcatttac ... ttcattgcagTTGGAGAAAAGTGCTGCCCTCTTCAGACCAAAACTAATTGTTGCTGGCGCA
EST: CAATGCCATACAGATTGGATGAAAAAACTGGATATATTGACTATGACCAG TTGGAGAAAAGTGCTGCCCTCTTCAGACCAAAACTAATTGTTGCTGGCGCAEST: gi|110359383|gb|EC920779.1|EC920779
genomic: CAATGCCATACAGATTGGATGAAAAAACTGGATATATTGACTATGACCAGgtgcatttac ... ttcattgcagTTGGAGAAAAGTGCTGCCCTCTTCAGACCAAAACTAATTGTTGCTGGCGCA
EST: CAATGCCATACAGATTGGATGAAAAAACTGGATATATTGACTATGACCAG TTGGAGAAAAGTGCTGCCCTCTTCAGACCAAAACTAATTGTTGCTGGTGCAEST: gi|352768688|gb|FQ467900.1|FQ467900
genomic: CAATGCCATACAGATTGGATGAAAAAACTGGATATATTGACTATGACCAGgtgcatttac ... ttcattgcagTTGGAGAAAAGTGCTGCCCTCTTCAGACCAAAACTAATTGTTGCTGGCGCA
EST: CAATGCCATACAGATTGGATGAAAAAACTGGATATATTGACTATGACCAG TTGGAGAAAAGTGCTGCCCTCTTCAGACCAAAACTAATTGTTGCTGGCGCAEST: gi|161713667|gb|FC062807.1|FC062807
genomic: CAATGCCATACAGATTGGATGAAAAAACTGGATATATTGACTATGACCAGgtgcatttac ... ttcattgcagTTGGAGAAAAGTGCTGCCCTCTTCAGACCAAAACTAATTGTTGCTGGCGCA
EST: CAATGCCATACAGATTGGATGAAAAAACTGGATATATTGACTATGACCAG TTGGAGAAAAGTGCTGCCCTCTTCAGACCAAAACTAATTGTTGCTG
genomic: CAATGCCATACAGATTGGATGAAAAAACTGGATATATTGACTATGACCAGgtgcatttac ... ttcattgcagTTGGAGAAAAGTGCTGCCCTCTTCAGACCAAAACTAATTGTTGCTG
aataaaataaaataaaatgaaagttgactttgtgaaataaaaatattcattgcagTTGGAGAAAAGTGCTGCCCTCTTCAGACCAAAACTAATTGTTGCTGGCGCAAGTGCCTATGCACGTCTTTATGATTATGCACGTATCCGCAAG
agttgac putative branch site (score: 4)
tttgtgaaataaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttccaattttgtttataaagagttgactttatgcctatcaaacaaataaaataaaataaaatgaaagttgactttgtgaaataaaaatattcattgcagTTGGAGAAAAGTGCTGCCCTCTTCAGACCAAAACTAATTGTTGCTGGCGCAAGTGCCTATGCACGTCTTTATGATTATGCACGTATCCGCAAG
- - - - - - - -ataaaga
- - - - - - - - - - - - - - - tatgcct
- - - - - - - - - - - - - - - - - - -atcaaac
- - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgaaa