Sequence
atgc intronic sequence ATGC exonic sequencegtaagtttcctcttcaaagattattattattattattttacgatgtggcttcccattattttttcctgcttgtagATCAACCGTGATCCAATGGCAGCTCAAATGCAAAGAATGCGGAGCCAAATTGAGCAATTACAGTCTGAGCTTCTTTATTTCCGTGGCGATGCTGGTGCTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g07550.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA14G36030.1 (Glycine max), 3'ss of exon 8
-------------------------------------------gtaagtttcctcttcaaagattattattattattatt-ttacgatgtggcttcccattatttt----ttcctgcttgtagATCAACCGTGATCCAATGGCAGCTCAAATGCAAAGAATGCGGAGCCAAATTGAGCAATTACAGTCTGAGCTTCTTTATTTCCGTGGCGATGCTGGTGCTC
|| | ||| | || | | | || ||| || | | || || || |||| || || ||| |||||||| ||||||||| ||| |||||| ||||| |||||||| || || ||||||||||| |||||||||||||| | | | | || ||||||||||
gtaagtgctttatattagtgttcttgatgtttcgtcttgtgttgtcactttttttccttaaattgtgagtgacaatcattcttgtttttttgcatctgatggttttaaattttcttcttttagATCAATCGTGATCCAGTGGGAGCTCAGATGCAGAGAATGCGAAGTCAGATTGAGCAATTGCAGTCTGAGCTTCTGTTATACAGAGGTGATGCTGGTGGGG
upper sequence: Vv18s0001g07550.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G37800.1 (Glycine max), 3'ss of exon 8
-------------------------------------------gtaagtttcctcttcaaagattattattattattattttacgatgtggct--tcccattattttttcctgcttgtagATCAACCGTGATCCAATGGCAGCTCAAATGCAAAGAATGCGGAGCCAAATTGAGCAATTACAGTCTGAGCTTCTTTATTTCCGTGGCGATGCTGGTGCTC
|| ||| | | ||| | | | || || | | || | | ||| ||||| | || ||||||| ||||||||| ||| |||||| ||||| |||||||| || || ||||||||||| |||||||||||||| | | | | || ||||||||||
gtaagtgctttatattagtgttctcgatgttttgttttgctttgttgctttttttcttaaattgtgtgacaatcgttcatgttttttgcatttgatggttttaaattttcttcttttaagATCAATCGTGATCCAGTGGGAGCTCAGATGCAGAGAATGCGAAGTCAGATTGAGCAATTGCAGTCTGAGCTTCTATTATACAGAGGTGATGCTGGTGGGG
upper sequence: Vv18s0001g07550.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G60930.1 (Arabidopsis thaliana), 3'ss of exon 8
----------gtaagtttcctcttcaaa-----gattatta-ttattattat--tttacgatgtggc-ttcccattattttttcctgcttgtagATCAACCGTGATCCAATGGCAGCTCAAATGCAAAGAATGCGGAGCCAAATTGAGCAATTACAGTCTGAGCTTCTTTATTTCCGTGGCGATGCTGGTGCTC
|| |||| ||| || ||| | | ||| ||| ||| | | | ||| | |||| ||| |||||||| || || ||| | || ||||||||||||||||||||||||||||||||| | || | || || | | | | || ||| |||||||
gtacttatatgttagttcttgcttttaattatgaattctcaactatagatatcatttgtggcctaacattcttgtcatttcttctaatacttagATCAATCGAGACCCAGCAACCGCACAAATGCAAAGAATGCGGAGCCAAATTGAGCAACTGCAAACAGAACTCTTGTTCTATAGGGGTGATAGTGGTGCTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttattattattattattttacgatgtggcttcccattattttttcctgcttgtagATCAACCGTGATCCAATGGCAGCTCAAATGCAAAGAATGCGGAGCCAAATTGAGCAATTACAGTCTGAGCTTCTTTATTTCCGTGGCGATGCTGGTGCTC
cttcccattatttttt CT-rich tract
attattattattttac TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtttcctcttcaaagattattattattattattttacgatgtggcttcccattattttttcctgcttgtagATCAACCGTGATCCAATGGCAGCTCAAATGCAAAGAATGCGGAGCCAAATTGAGCAATTACAGTCTGAGCTTCTTTATTTCCGTGGCGATGCTGGTGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG