Sequence
atgc intronic sequence ATGC exonic sequence...aaaaaaaaaagcaacttggttgttttgcaatatgaataaggtaggaattgtcagaccttgtctttctgcttttttgtaattataatacatattacttcagCGTGTGGGTTGGTGGTCACCGACAATCATAAGAGGTGATGATCGTGAAGCAGTTCATGTTCCAAACAACAAATTCACAGTGAATGTTGTGAGGAATCTCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g07520.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA06G10060.1 (Glycine max), 3'ss of exon 10
-----------------------------------------------------------aaaaaaaaaagcaacttggttgtt-ttgcaat---atgaataaggtaggaattgt---------cagaccttgtctttctgc------------ttttttgtaattataatacatatta-cttcagCGTGTGGGTTGGTGGTCACCGACAATCATAAGAGGTGATGATCGTGAAGCAGTTCATGTTCCAAACAACAAATTCACAGTGAATGTTGTGAGGAATCTCA
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gtttgtatctctaccttagaaggaacttttactagtataagtttgatgctggtccattatgaataatttataatttttttattgtcacaatcatgtgacaaatagaagaatcattaccaactgcagattttctttttgtgcaacaacttaaattatgttgtattcaaattttgttttttctccagCATGTAGGCTGGTGGTCACCAACCATCATCAGAGGTGATGATCGTGAGGCAGTTCATATTCCTAACCACAAGTTTACAGTAAATGTTGTGAGAAATCTGA
upper sequence: Vv18s0001g07520.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA04G10060.1 (Glycine max), 3'ss of exon 11
------------------------------------------------------aaaaaaaaaagcaacttggt-tgttttgcaatatgaataaggtaggaattgt---------cagaccttgtctttctgc------tt---ttttgtaattataatacatatta-cttcagCGTGTGGGTTGGTGGTCACCGACAATCATAAGAGGTGATGATCGTGAAGCAGTTCATGTTCCAAACAACAAATTCACAGTGAATGTTGTGAGGAATCTCA
| | | | ||| | || | | || ||| ||| | |||| | |||| || | ||| ||| || || |||| ||| | | | || || |||| ||| || ||||||||||| || ||||| |||||||||||||| || ||||||||| |||| ||| |||| || || || ||||||||||| ||||| |
gtttgtatctctaccttagttactttaatagtataagtttcatgctggtccactatatatataagtatttttatctccacaatcatgtgactaatagaagaatcattaccaatggcagattttctttttgtgcaacaacttcaattatgtatttaaattttgttttttctccagCATGTAGGCTGGTGGTCACCAACCATCATCAGAGGTGATGATCGCGAGGCAGTTCATATTCCTAACCACAAGTTTACTGTAAATGTTGTGAGAAATCTGA
upper sequence: Vv18s0001g07520.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA06G10050.1 (Glycine max), 3'ss of exon 10
-------------------------------------------------aaaaaaaaaagcaacttggt-----tgttttgcaatatgaataaggtaggaattgtcagaccttgtctttct---gcttttttgtaattataatacatatta-cttcagCGTGTGGGTTGGTGGTCACCGACAATCATAAGAGGTGATGATCGTGAAGCAGTTCATGTTCCAAACAACAAATTCACAGTGAATGTTGTGAGGAATCTCA
|||| | || | | | || || ||| || || | | | | | ||| || ||||||| | | | |||||| || ||| ||| || ||||||||||| ||||| | |||||| |||| |||||||||||||| |||| || |||| || | || ||||||||||||||||| |
gtttgtatctatcacctaactaactgacaaggttgtttaggaggaacagaaaacataatgttattcagtgcaagtgattttcataataagtgatattttccccaagtatatataacttcaaaaaatttcattgtaatcaaatttcatattttctctagCATGTAGGCTGGTGGTCACCAACAATAGTTAGAGGTTCTGATTGTGAAGCAGTTCATATTCCTAATCACAATTTGAGTGTAAATGTTGTGAGGAATCTTA
upper sequence: Vv18s0001g07520.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S79_156V6.1 (Physcomitrella patens), 3'ss of exon 9
-aaaaaaaaaagcaacttggttgttttgcaatatgaataaggtaggaattgtcagaccttgtctttctgcttttttgtaattataatacatattacttcagCGTGTGGGTTGGTGGTCACCGACAATCATAAGAGGTGATGATCGTGAAGCAGTTCATGTTCCAAACAACAAATTCACAGTGAATGTTGTGAGGAATCTCA
| || || | ||| | || || || | | || || | |||| | | | | | | | | ||| ||| ||| ||||||||||| ||||| | || ||||| |||||||||||||| ||||| |||||||| |||| |||| || | ||| || | ||| | |
agacgtaaggtgctccgaagtttctctgtgttagtgatctgacactaacagt-gtattttgtactgcgatctactgagactcggtgttgaaatttgcacagTATGTTGGTTGGTGGTCTCCGACTGTGATTAGAGGAGATGATCGTGAAGCTGTTCACATTCCAAACCACAAGTTCAGTGTAAGTGTAGTCCGTAATTTGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattgtcagaccttgtctttctgcttttttgtaattataatacatattacttcagCGTGTGGGTTGGTGGTCACCGACAATCATAAGAGGTGATGATCGTGAAGCAGTTCATGTTCCAAACAACAAATTCACAGTGAATGTTGTGAGGAATCTCA
ttacttc CT-rich tract
ttttttgtaattataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaaaaaaaagcaacttggttgttttgcaatatgaataaggtaggaattgtcagaccttgtctttctgcttttttgtaattataatacatattacttcagCGTGTGGGTTGGTGGTCACCGACAATCATAAGAGGTGATGATCGTGAAGCAGTTCATGTTCCAAACAACAAATTCACAGTGAATGTTGTGAGGAATCTCA
aaaaaaa
- - - - - - - - - - - ttttgca
- - - - - - - - - - - - - - - - -gaataag