1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttatctttgttgacaaatgtagtgaagacttggattgggttatgtttaataccatattttgttggtggtgctgacaattttttatggttttgttatttagGTTCGGGATGCGGGCAATCTTTTGACTCGTGCAGGCTTTACGCTTCCTAGTGTTGATGTTGATGAATACACTGTTAAATATAGAAGTG
species | Vitis vinifera |
transcript | Vv18s0001g06830.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAATGGAGCGTGAAGGGGGCATAAGTCCACGAGTATCACCATTGGCACAG GTTCGGGATGCAGGCAATCTTTTGACTCGTGCAGGCTTTACGCTTCCTAGT
genomic: AAATGGAGCGTGAAGGGGGCATAAGTCCACGAGTATCACCATTGGCACAGgtgggtactt ... tgttatttagGTTCGGGATGCGGGCAATCTTTTGACTCGTGCAGGCTTTACGCTTCCTAGT
ttaataccatattttgttggtggtgctgacaattttttatggttttgttatttagGTTCGGGATGCGGGCAATCTTTTGACTCGTGCAGGCTTTACGCTTCCTAGTGTTGATGTTGATGAATACACTGTTAAATATAGAAGTG
tgctgac putative branch site (score: 2)
ttttgtt putative PPT
aattttttatggtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatctttgttgacaaatgtagtgaagacttggattgggttatgtttaataccatattttgttggtggtgctgacaattttttatggttttgttatttagGTTCGGGATGCGGGCAATCTTTTGACTCGTGCAGGCTTTACGCTTCCTAGTGTTGATGTTGATGAATACACTGTTAAATATAGAAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - -tgttgac
- - - - - - - - - - - tgaagac
- - - - - - - - - - - - - - - -ggattgg
- - - - - - - - - - - - - - - - - - - - - - - -aatacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgacaa