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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttactaaacagttggttggattatttggatggatttatcatttcctatagcatgtctaagaaaaatccagtatgttattgcagAATCAGGCATTGCTAGATGCTGCTGAGAGTAAAATTACAGAAACCAAGAAGCAATACGATCTGATGCTTGAAACTAAACAATTAGAGTTATCAAGGCATT

Basic information

species Vitis vinifera
transcript Vv18s0001g05600.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g05600.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G22275.1 (Arabidopsis thaliana), 3'ss of exon 7
gtttactaaacagttggttggattatttggatggatttatcatttcctatagcatgtctaagaaaaatccagtatgttattgcagAATCAGGCATTGCTAGATGCTGCTGAGAGTAAAATTACAGAAACCAAGAAGCAATACGATCTGATGCTTGAAACTAAACAATTAGAGTTATCAAGGCATT
|| ||| ||  |  |  | |||        || | ||||   |||  ||   |   || || |  |||||       || ||||| |  |||   | || |   ||||||| | |||  || ||||| | ||||||||||| || |||||||| |||| |||||| || || ||||||||||| |
gtctacaaagtaaattctgggac-------ataggtttaaggttttttagtactcatcaaatatgaatcc-------tactgcagGACAAGGAGCTACTCGCAACTGCTGAAACTAAGCTTGCAGAAGCAAAGAAGCAATATGACCTGATGCTAGAAAGTAAACAGTTGGAATTATCAAGGCACT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggatttatcatttcctatagcatgtctaagaaaaatccagtatgttattgcagAATCAGGCATTGCTAGATGCTGCTGAGAGTAAAATTACAGAAACCAAGAAGCAATACGATCTGATGCTTGAAACTAAACAATTAGAGTTATCAAGGCATT
     tttatcattt  TA-rich tract