Sequence
atgc intronic sequence ATGC exonic sequencegtaagagtccttaattttgatcaatatgcaccctaaaaatctgtgggagttttaagtttttttccttgattctcgcgtgatttgaggaacagGGAAAGAAGAACAAGAAATTTTTCTGGGTACCTGCAATTGCTCCATTGATATCAGTTATTCTGTCTACCTTCTTCGTGTACATTACCCGTGCAGATAAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g04910.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA06G11140.1 (Glycine max), 3'ss of exon 6
--------------gtaagagtccttaattttgatcaatatgcaccctaaa-aatctgtgggagttt-taagtttttttccttgattctcgcgtgatttgaggaacagGGAAAGAAGAACAAGAAATTTTTCTGGGTACCTGCAATTGCTCCATTGATATCAGTTATTCTGTCTACCTTCTTCGTGTACATTACCCGTGCAGATAAGA
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gtaagacattattagaccgcccccttattcatttttctattattccgtaattgatcattaggattttgtaaattgttttctcattatttcatattttgtgtggatcagGGAAAGAAAAACAAGAAATTCTTCTGGGTGCCAGCAATTGCTCCATTGATATCCGTTATTTTATCCACTTTTTTTGTATTCATAACCCGTGCAGATAAGC
upper sequence: Vv18s0001g04910.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA04G11580.1 (Glycine max), 3'ss of exon 6
----------gtaagagtccttaattttgatcaatat-gcaccctaaaaatctgtgggagttttaagtttttttccttgattctcgcgtgatttgaggaacagGGAAAGAAGAACAAGAAATTTTTCTGGGTACCTGCAATTGCTCCATTGATATCAGTTATTCTGTCTACCTTCTTCGTGTACATTACCCGTGCAGATAAGA
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gtaagacatttgaccacccccttattccttttgctattgttccctaattattcattaggaatttgtaatttgttttctcattatttcatattttgtggttcagGGAAAGAAAAACACGAAATTCTTCTGGGTACCAGCAATTGCTCCATTGATATCCGTTATTTTGTCCACTTTTATTGTATTCATAACCCGTGCAGATAAGC
upper sequence: Vv18s0001g04910.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA14G34220.1 (Glycine max), 3'ss of exon 7
gtaagagtccttaatt-ttgatcaatatgcaccctaaa-aatctgtgggagttttaagtttttttccttgattctcgcgtgatttgaggaa------cagGGAAAGAAGAACAAGAAATTTTTCTGGGTACCTGCAATTGCTCCATTGATATCAGTTATTCTGTCTACCTTCTTCGTGTACATTACCCGTGCAGATAAGA
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gtaagcacaccaattcatttgtctacatattccataaacagattatgaatattgtaaattattttctc--attattgtattatatatggatatgcatcagGGAAAGAAGAACCCGAAATTCTTTTGGGTGCCAGCAATTGCCCCATTGATATCTGTTATTCTCTCTACCCTTTTTGTATTCTTAATCCGTGCAGACAAGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatctgtgggagttttaagtttttttccttgattctcgcgtgatttgaggaacagGGAAAGAAGAACAAGAAATTTTTCTGGGTACCTGCAATTGCTCCATTGATATCAGTTATTCTGTCTACCTTCTTCGTGTACATTACCCGTGCAGATAAGA
ccttgat putative branch site (score: 5)
agttttaagttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagagtccttaattttgatcaatatgcaccctaaaaatctgtgggagttttaagtttttttccttgattctcgcgtgatttgaggaacagGGAAAGAAGAACAAGAAATTTTTCTGGGTACCTGCAATTGCTCCATTGATATCAGTTATTCTGTCTACCTTCTTCGTGTACATTACCCGTGCAGATAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT