1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atttcttgccattttcattcatatttgtcaacagttatgagaagctccttttcagcaagtagttctgtccattaaatatttgatctttgcattggagcagATTTTACACAAGATTGCAGTACCAATGAGGACTCTAGGAGGACAAGGAATGTTTTACCTTGCAGCTGCAGTATCAGACTTTTATGTTCCATGGAACAGCA
species | Vitis vinifera |
transcript | Vv18s0001g04420.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGGCATGTTGTTGAAACTTCCCTATACAACCATATTTGAGTATCTTCAG ATTTTACACAAGATTGCAGTACCAATGAGGACTCTAGAAGGACGAGGAATGEST: gi|110726674|gb|EE102660.1|EE102660
genomic: AAGGCATGTTGTTGAAACTTCCCTATACAACCATATTTGAGTATCTTCAGgtcagatgat ... attggagcagATTTTACACAAGATTGCAGTACCAATGAGGACTCTAGGAGGACAAGGAATG
EST: AAGGCATGTTGTTGAAACTTCCCTATACAACCATATTTGAGTATCTTCAG ATTTTACACAAGATTGCAGTACCAATGAGGACTCTAGGAGGACAAGGAATGEST: gi|71859197|gb|DT008252.1|DT008252
genomic: AAGGCATGTTGTTGAAACTTCCCTATACAACCATATTTGAGTATCTTCAGgtcagatgat ... attggagcagATTTTACACAAGATTGCAGTACCAATGAGGACTCTAGGAGGACAAGGAATG
EST: AAGGCATGTTGTTGAAACTTCCCTATACAACCATATTTGAGTATCTTCAG ATTTTACACAAGATTGCAGTACCAATGAGGACTCTAGAAGGACGAGGAATG
genomic: AAGGCATGTTGTTGAAACTTCCCTATACAACCATATTTGAGTATCTTCAGgtcagatgat ... attggagcagATTTTACACAAGATTGCAGTACCAATGAGGACTCTAGGAGGACAAGGAATG
tccttttcagcaagtagttctgtccattaaatatttgatctttgcattggagcagATTTTACACAAGATTGCAGTACCAATGAGGACTCTAGGAGGACAAGGAATGTTTTACCTTGCAGCTGCAGTATCAGACTTTTATGTTCCATGGAACAGCA
atttgat putative branch site (score: 5)
attaaatatttgatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttcttgccattttcattcatatttgtcaacagttatgagaagctccttttcagcaagtagttctgtccattaaatatttgatctttgcattggagcagATTTTACACAAGATTGCAGTACCAATGAGGACTCTAGGAGGACAAGGAATGTTTTACCTTGCAGCTGCAGTATCAGACTTTTATGTTCCATGGAACAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - cttgcca
- - - - - - - -cattcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - gcaagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtcca