1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagcatcattctttgactacttgttgaggtttgagaagatcttctgttttttcactcaactttcctcatatttggaaactaaactctgtttttctttgaccttttagATCGATTACCTCCATCGAACTGGAAGAACTGCACGAATGGGAGCAAAAG
species | Vitis vinifera |
transcript | Vv18s0001g02530.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGATTTGGATGTTGATCATGTCATCATGTTTGACTTTCCCTTGAATTCT ATCGATTACCTCCATCGAACTGGAAGAACTGCACGAATGGGAGCAAAAGEST: gi|110361756|gb|EC925252.1|EC925252
genomic: TGGATTTGGATGTTGATCATGTCATCATGTTTGATTTTCCCTTGAATTCTgtaagcatca ... gaccttttagATCGATTACCTCCATCGAACTGGAAGAACTGCACGAATGGGAGCAAAAG
EST: TGGATTTGGATGTTGATCATGTCATCATGTTTGATTTTCCCTTGAATTCT ATCGATTACCTCCATCGAACTGGAAGAACTGCACGAATGGGAGCAAAAGEST: gi|110689560|gb|EE065889.1|EE065889
genomic: TGGATTTGGATGTTGATCATGTCATCATGTTTGATTTTCCCTTGAATTCTgtaagcatca ... gaccttttagATCGATTACCTCCATCGAACTGGAAGAACTGCACGAATGGGAGCAAAAG
EST: GGATTTGGATGTCGATCATGTTATCATGTTTGAATTTTCC-TTGAATTCT ATCGATTACCTCCATCGAACTGGAAGAACTGCACCAATGG
genomic: GGATTTGGATGTTGATCATGTCATCATGTTTGA-TTTTCCCTTGAATTCTgtaagcatca ... gaccttttagATCGATTACCTCCATCGAACTGGAAGAACTGCACGAATGG
cactcaactttcctcatatttggaaactaaactctgtttttctttgaccttttagATCGATTACCTCCATCGAACTGGAAGAACTGCACGAATGGGAGCAAAAG
ctctgtttttctttga CT-rich tract
tttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcatcattctttgactacttgttgaggtttgagaagatcttctgttttttcactcaactttcctcatatttggaaactaaactctgtttttctttgaccttttagATCGATTACCTCCATCGAACTGGAAGAACTGCACGAATGGGAGCAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA