Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgattttactcttttttttctttctttctttttttttcttttccctttgcagtctttctttattttgaacttgaattgatgatactgataaggtggttgcttttctttagAGATGAGGAACTTCTATGTCAGGGATTGGCATTGAATGATAACTTGCAGCGTGTGTTGCGCAAGCATGATGATATAGCTAAAGGTGCTCCTGCTGTGGCA

Basic information

species Vitis vinifera
transcript Vv18s0001g01180.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g01180.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G76970.1 (Arabidopsis thaliana), 3'ss of exon 8
gtacgattttactcttttttttctttctttctttttttttcttttccctttgcagtctttctttattttgaacttgaattgatgatactgataaggtggttgcttttctttagAGATGAGGAACTTCTATGTCAGGGATTGGCATTGAATGATAACTTGCAGCGTGTGTTGCGCAAGCATGATGATATAGCTAAAGGTGCTCCTGCTGTGGCA
                                   |   |   |     |||||  |||  || ||      |     | |||| ||   |    ||  ||    ||||  ||||||||||||||||| ||||||||||||||||| || ||||| ||||||| |||  | |     || |||||||| || || |  |   ||| |    ||
----------------------------------gtaagttaatattacttgcatccttctttcat------ccccgttcgatgctaa-aacgtcgtttttttaattctccagAGATGAGGAACTTCTGTGTCAGGGATTGGCATTAAACGATAATTTGCAGCATGTTCTTCAGCGTCACGATGATATCGCAAATGTCGGCTCTGTTCCTTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110697681|gb|EE074884.1|EE074884
EST:     CAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGT                         AGATGAGGAACTTCTATGTCAGGGATTGGCATTGAATGATAACTTGCAGCG
genomic: CAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGTgtacgatttt ... ttttctttagAGATGAGGAACTTCTATGTCAGGGATTGGCATTGAATGATAACTTGCAGCG
EST: gi|32269534|gb|CD718693.1|CD718693
EST:     CAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGT                         AGATGAGGAACTTCTATGTCAGGGATTGGCATTGAATGATAACTTGCAGCG
genomic: CAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGTgtacgatttt ... ttttctttagAGATGAGGAACTTCTATGTCAGGGATTGGCATTGAATGATAACTTGCAGCG
EST: gi|110696101|gb|EE074878.1|EE074878
EST:     CAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGT                         AGATGAGGAACTTCTATGTCAAGGATTGGCATTGAATGATAACTTGCAGCG
genomic: CAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGTgtacgatttt ... ttttctttagAGATGAGGAACTTCTATGTCAGGGATTGGCATTGAATGATAACTTGCAGCG
EST: gi|294966615|gb|GW839606.1|GW839606
EST:     CAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGT                         AGATGAGGGACTTCTATGTCAGGGATTGGCATTGAATGATAACTTGCAGCG
genomic: CAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGTgtacgatttt ... ttttctttagAGATGAGGAACTTCTATGTCAGGGATTGGCATTGAATGATAACTTGCAGCG
EST: gi|110686103|gb|EE063415.1|EE063415
EST:     CAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGT                         AGATGAGGAACTTCTATGTCAGGGATTGGCATTGAATGATAACTTGCAGCG
genomic: CAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGTgtacgatttt ... ttttctttagAGATGAGGAACTTCTATGTCAGGGATTGGCATTGAATGATAACTTGCAGCG
EST: gi|110721049|gb|EE097599.1|EE097599
EST:     GTGCCCCCATTTACCAAA-GCGTGTCATGCCTTCTTGGGAATGATACTGT                         AAATGAGGAACTT
genomic: GTGCCGCAATT-ACCAAAAGCGTGTCATGC-TTCTTGTGAATGATACTGTgtacgatttt ... ttttctttagAGATGAGGAACTT
EST: gi|161717089|gb|FC069551.1|FC069551
EST:     CAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGT                         AGATGAGGAACTTCTATGTCAGGGATTGGCATTGAATGATAACTTGCAGCG
genomic: CAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGTgtacgatttt ... ttttctttagAGATGAGGAACTTCTATGTCAGGGATTGGCATTGAATGATAACTTGCAGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctttattttgaacttgaattgatgatactgataaggtggttgcttttctttagAGATGAGGAACTTCTATGTCAGGGATTGGCATTGAATGATAACTTGCAGCGTGTGTTGCGCAAGCATGATGATATAGCTAAAGGTGCTCCTGCTGTGGCA
                           tactgat  putative branch site (score: 2)
                                         ttgcttttcttt  putative PPT
     tattttgaa  TA-rich tract