1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atgttaaattctcttctttaagtggactgttattgttggctcctctcttaaaatgttgaattctcttatttaatgcaaagtttgttgcataaattttcagGATCAACCTGAACGTGCTGTTCCAATACTGTCTAAGATGAAACAACTGAAGCTTCAGCCAAATGTTGGAACATATGAGCTGCTATTCTCCCTATTTGGTA
species | Vitis vinifera |
transcript | Vv18s0001g00070.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTTCATATGTTCATCCCTTTAATGCTTTTCTTGCAGCATGTGACACACTG GATCAACCTGAACGTGCTGTTCCAATACTGTCTAAGATGAAACAACTGAAGEST: gi|71862794|gb|DT011849.1|DT011849
genomic: TTTCATATGTTCATCCCTTTAATGCTTTTCTTGCAGCATGTGACACACTGgtgggtttat ... aaattttcagGATCAACCTGAACGTGCTGTTCCAATACTGTCTAAGATGAAACAACTGAAG
EST: TTTCATATGTTCATCCCTTTAATGCTTTTCTTGCAGCATGTGACACACTG GATCAACCTGAACGTGCTGTTCCAATACTGTCTAAGATGAAACAACTGAAGEST: gi|27584611|gb|CB007306.1|CB007306
genomic: TTTCATATGTTCATCCCTTTAATGCTTTTCTTGCAGCATGTGACACACTGgtgggtttat ... aaattttcagGATCAACCTGAACGTGCTGTTCCAATACTGTCTAAGATGAAACAACTGAAG
EST: TTTCATATGTTCATCCCTTTAATGCTTNTCTTGCAGCATGTGACACACTG GATTCCAACCTGAACGTGCTGTTCCAATACTGTCT
genomic: TTTCATATGTTCATCCCTTTAATGCTTTTCTTGCAGCATGTGACACACTGgtgggtttat ... aaattttcagGAT-C-AACCTGAACGTGCTGTTCCAATACTGTCT
tcttaaaatgttgaattctcttatttaatgcaaagtttgttgcataaattttcagGATCAACCTGAACGTGCTGTTCCAATACTGTCTAAGATGAAACAACTGAAGCTTCAGCCAAATGTTGGAACATATGAGCTGCTATTCTCCCTATTTGGTA
atttaat putative branch site (score: 4)
ttttc putative PPT
aattctcttatttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttaaattctcttctttaagtggactgttattgttggctcctctcttaaaatgttgaattctcttatttaatgcaaagtttgttgcataaattttcagGATCAACCTGAACGTGCTGTTCCAATACTGTCTAAGATGAAACAACTGAAGCTTCAGCCAAATGTTGGAACATATGAGCTGCTATTCTCCCTATTTGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - -tctcttc
- - - - - - - - - - - - - - - - -tgttggc
- - - - - - - - - - - - - - - - - - - - tcctctc
- - - - - - - - - - - - - - - - - - - - - - - - taaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgca