Sequence
atgc intronic sequence ATGC exonic sequence...tgctctattatatttcttgacaagttactcaataattggtctttccgttgccctttttttcaaaacagtaaatccatacacttcaattctgtaattgcagGAAGATCCTTGAAAGTTTGACTATAGCATATGGGCAAATGATACTGAAGAGTGGTTTCTTCCATGCAGATCCCCATCCTGGAAATATTCTGATCTGCAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g10260.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G13650.1 (Glycine max), 3'ss of exon 7
---------tgctctattatatttcttgacaagttactcaataattggtctttccgttgccctttttttcaaaacagtaaatccatacacttcaattctgtaattgcagGAAGATCCTTGAAAGTTTGACTATAGCATATGGGCAAATGATACTGAAGAGTGGTTTCTTCCATGCAGATCCCCATCCTGGAAATATTCTGATCTGCAAA
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aataacaataacaccaacttcttccctgaagatttataatatagatgatttttcatatgcattttta--------agtgtatt-acactattaacttgtaaaagtgcagGAAAATTCTTCAAAGCTTGACTCTAGCATATGGTCAAATGATTTTGAAAAGTGGATTCTTCCATGCAGATCCTCATCCAGGAAATATCCTGATTTGTAAA
upper sequence: Vv17s0000g10260.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA05G02990.1 (Glycine max), 3'ss of exon 7
---------tgctctattatatttcttgacaagttactcaataattggtctttccgttgccctttttttcaaaacagtaaatccatacacttcaattctgtaattgcagGAAGATCCTTGAAAGTTTGACTATAGCATATGGGCAAATGATACTGAAGAGTGGTTTCTTCCATGCAGATCCCCATCCTGGAAATATTCTGATCTGCAAA
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aataacaataacaccaactttttccctgaagatttataatatagatgatttttcatatgtattttta--------ggtgtatt-acactattaacttgtaaaagtgcagGAAAATTCTTCAAAGCTTGACTCTAGCATATGGTCAAATGATTTTGAAAAGTGGATTCTTCCATGCAGATCCTCATCCAGGAAATATCCTGATTTGTAAA
upper sequence: Vv17s0000g10260.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT4G24810.1 (Arabidopsis thaliana), 3'ss of exon 7
------tgctctattatat--------ttcttgacaagttactcaataattggtc-tttccgttgccctt---tttttcaaaacagtaaatccatacacttcaattctgtaattgcagGAAGATCCTTGAAAGTTTGACTATAGCATATGGGCAAATGATACTGAAGAGTGGTTTCTTCCATGCAGATCCCCATCCTGGAAATATTCTGATCTGCAAA
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gtaagctcctccattatctcagataggtttttgactttttccaatggcattggcggcttttaaagcatttggatcttgtctaatgctgcattggaaaatgt--attttgtt-ttctagCAATATACTACACAGTTTGTCCCAAGCATATGGCCAAATGATACTGAAGAGTGGTTTCTTTCATGCGGATCCACATCCTGGGAATATCTTGATTGGTAAA
upper sequence: Vv17s0000g10260.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G50330.2 (Arabidopsis thaliana), 3'ss of exon 6
----------------------------------------------------------------tgctctattatatttcttgacaagt----tactcaataattggtctttccgttgccctttttttcaaaacagtaaatccatacacttca---attctgtaat---------tgcagGAAGATCCTTGAAAGTTTGACTATAGCATATGGGCAAATGATACTGAAGAGTGGTTTCTTCCATGCAGATCCCCATCCTGGAAATATTCTGATCTGCAAA
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gtaagctcctacatcatctcagagagtatggtgccttagttctttggcctaaagtcttagtagctattatgtgctagaaatccacatgtccttttttcttttgttgttgttgttgttatattggcttgcattatgaaatatactgacaccacactgaatctatatctcctctttcttcagCAATATACTTAACAGTTTATCCCGTGCGTATGGCCAAATGATACTGAAAAGTGGTTTCTTTCATGCGGATCCACATCCTGGAAATATCTTGATTTGCAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgttgccctttttttcaaaacagtaaatccatacacttcaattctgtaattgcagGAAGATCCTTGAAAGTTTGACTATAGCATATGGGCAAATGATACTGAAGAGTGGTTTCTTCCATGCAGATCCCCATCCTGGAAATATTCTGATCTGCAAA
tttttttcaaaaca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgctctattatatttcttgacaagttactcaataattggtctttccgttgccctttttttcaaaacagtaaatccatacacttcaattctgtaattgcagGAAGATCCTTGAAAGTTTGACTATAGCATATGGGCAAATGATACTGAAGAGTGGTTTCTTCCATGCAGATCCCCATCCTGGAAATATTCTGATCTGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccataca