1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgtagacaaacaataagatcatcttagctagttgtatttcactttacggttcaggctgggcatattccctcatgaccagaatgggtggcttcttttgcagGTATAGAGGGAAGAGGATGAGAATAGACTATTTCATAGTTCCAGAGGCACTCAAAGATAGGATTGTTGCATGTGAGATCCATGGACAGGGGATTGAATTA
species | Vitis vinifera |
transcript | Vv17s0000g09970.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAAAAAGACATGGAAGGTGGCTTCTCATGGTCTGGAAACCCTATTGGAAA GTATAGAGGGAAGAGGATGAGAATAGACTATTTCATAGTTCCAGAGGCACT
genomic: GAAAAAGACATGGAAGGTGGCTTCTCATGGTCTGGAAACCCTATTGGAAAgtaaggagtt ... tcttttgcagGTATAGAGGGAAGAGGATGAGAATAGACTATTTCATAGTTCCAGAGGCACT
acggttcaggctgggcatattccctcatgaccagaatgggtggcttcttttgcagGTATAGAGGGAAGAGGATGAGAATAGACTATTTCATAGTTCCAGAGGCACTCAAAGATAGGATTGTTGCATGTGAGATCCATGGACAGGGGATTGAATTA
cttcttttgc CT-rich tract
ttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtagacaaacaataagatcatcttagctagttgtatttcactttacggttcaggctgggcatattccctcatgaccagaatgggtggcttcttttgcagGTATAGAGGGAAGAGGATGAGAATAGACTATTTCATAGTTCCAGAGGCACTCAAAGATAGGATTGTTGCATGTGAGATCCATGGACAGGGGATTGAATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - -aaacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - aggctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - accagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggtgg