1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtcttccagcatgaaaatctttttcgtaagatgtgttttggtttttcttttgttaagcaagtgttaaaaagtacctgttgtgtggctgcagGGTTTCAATGACACAGAACTGAACAAGAAGCTGTTGAGGAAGAACAATGGCAGTCTCAAGCGCGTGGTCATGGATCTTATTGCTGTAGAGAAATATTAGT
species | Vitis vinifera |
transcript | Vv17s0000g09280.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTTGTGGTGTTGGGGAATGGGATCCTATCCTAGAGGAGTTGAAGGAGATG GGTTTCAATGACACAGAACTGAACAAGAAGCTGTTGAGGAAGAACAATGGCEST: gi|110730520|gb|EE107692.1|EE107692
genomic: TTTGTGGTGTTGGGGAATGGGATCCTATCCTAGAGGAGTTGAAGGAGATGgtgagtcttc ... gtggctgcagGGTTTCAATGACACAGAACTGAACAAGAAGCTGTTGAGGAAGAACAATGGC
EST: TTGTGGTGTTGGGGGAATGGGATCCTATCCTAAAGGAGTTGAAGGAGATG GGTTTNCA-TGACACAGAACTGAACAAGA-GCTGTTTGAG-AAGAACA-TGEST: gi|351016642|gb|FQ424069.1|FQ424069
genomic: TTGTGGTGTTGGGG-AATGGGATCCTATCCTAGAGGAGTTGAAGGAGATGgtgagtcttc ... gtggctgcagGGTTT-CAATGACACAGAACTGAACAAGAAGCTGTT-GAGGAAGAACAATG
EST: TTTGTGGTGTTGGGGAATGGGATCCTATCCTAGAGGAGTTGAAGGAGATG GGTTTCAATGACACAGAACTGAACAAGAAGCTGTTGAGGAAGAACAATGGCEST: gi|349823893|gb|FQ415304.1|FQ415304
genomic: TTTGTGGTGTTGGGGAATGGGATCCTATCCTAGAGGAGTTGAAGGAGATGgtgagtcttc ... gtggctgcagGGTTTCAATGACACAGAACTGAACAAGAAGCTGTTGAGGAAGAACAATGGC
EST: TTTGTGGTGTTGGGGAATGGGATCCTATCCTAGAGGAGTTGAAGGAGATG GGTTTCAATGACACAGAACTGAACAAGAAGCTGTTGAGGAAGAACAATGGCEST: gi|110424289|gb|EC990645.1|EC990645
genomic: TTTGTGGTGTTGGGGAATGGGATCCTATCCTAGAGGAGTTGAAGGAGATGgtgagtcttc ... gtggctgcagGGTTTCAATGACACAGAACTGAACAAGAAGCTGTTGAGGAAGAACAATGGC
EST: TTTGTGGTGTTGGGGAATGGGATCCTATCCTAGAGGAGTTGAAGGAGATG GGTTTCAATGACACAGAACTGAACAAGAAGCTGTTGAGGAAGAACAATGGC
genomic: TTTGTGGTGTTGGGGAATGGGATCCTATCCTAGAGGAGTTGAAGGAGATGgtgagtcttc ... gtggctgcagGGTTTCAATGACACAGAACTGAACAAGAAGCTGTTGAGGAAGAACAATGGC
tttggtttttcttttgttaagcaagtgttaaaaagtacctgttgtgtggctgcagGGTTTCAATGACACAGAACTGAACAAGAAGCTGTTGAGGAAGAACAATGGCAGTCTCAAGCGCGTGGTCATGGATCTTATTGCTGTAGAGAAATATTAGT
tttttcttttgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcttccagcatgaaaatctttttcgtaagatgtgttttggtttttcttttgttaagcaagtgttaaaaagtacctgttgtgtggctgcagGGTTTCAATGACACAGAACTGAACAAGAAGCTGTTGAGGAAGAACAATGGCAGTCTCAAGCGCGTGGTCATGGATCTTATTGCTGTAGAGAAATATTAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA