Sequence
atgc intronic sequence ATGC exonic sequence...ttctttagtgagagttgactcctaaatttgttgctgtctttgtattattcatcaattccgacaaaatttggctaaatatttagaaattggattgatgcagGTCTCTTATATGATATTGCAAAGGGTATCCCCAGTTACCCACTCTGTGGGTAATTGTGTTAAGCGGGTGGTGGTCATTGTTACTTCTGTTCTCTTCTTCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g08560.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA06G19250.1 (Glycine max), 3'ss of exon 7
--ttctttagtgagagttgactcctaaatttgttgctgtctttgtattattcatcaattccgacaaaatttggcta-aatatttagaaattggattgatgcagGTCTCTTATATGATATTGCAAAGGGTATCCCCAGTTACCCACTCTGTGGGTAATTGTGTTAAGCGGGTGGTGGTCATTGTTACTTCTGTTCTCTTCTTCC
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tcttcctaggccttatataacatggctcacttttgtaatagttaaatgatgttgtattcctga-atgatatagtgatggttttctgtgaatgggcc--tgcagGTTTCGTATATGATATTGCAAAGGGTATCACCTGTTACCCACTCTGTGGGTAATTGTGTGAAGCGGGTTGTGGTCATTGTGAGCTCTGTCATCTTCTTCC
upper sequence: Vv17s0000g08560.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA04G35730.1 (Glycine max), 3'ss of exon 7
ttctttagtgagagttgactccta-aatttgttgctgtctt--tgtattattcatcaattccgacaaaatttggcta-aatatttagaaattggattgatgcagGTCTCTTATATGATATTGCAAAGGGTATCCCCAGTTACCCACTCTGTGGGTAATTGTGTTAAGCGGGTGGTGGTCATTGTTACTTCTGTTCTCTTCTTCC
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--tcttgctgggtcttgtgtaacatggctcccttttgtaatagtgaaatggtgttgtgttccttaatgatatagtgatggttttctgtgaatgggcc--tgcagGTTTCTTATATGATATTGCAAAGGGTATCACCTGTTACCCACTCCGTGGGCAACTGTGTGAAGCGGGTTGTGGTCATTGTGAGCTCTGTCATCTTCTTCC
upper sequence: Vv17s0000g08560.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G09630.1 (Glycine max), 3'ss of exon 6
ttctttagtgagagttgactcctaaatttgttgctgtctttgtattattcatcaattccgacaaaatttggcta-aatatttagaaattggattgatgcagGTCTCTTATATGATATTGCAAAGGGTATCCCCAGTTACCCACTCTGTGGGTAATTGTGTTAAGCGGGTGGTGGTCATTGTTACTTCTGTTCTCTTCTTCC
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atctgaagtcattatatatttttgcgtggttcttttcaatgataggttttttgtattccttaatgatgtagagataattttgtttgaataaactg-tgcagGTTTCTTATATGATACTGCAGAAGGTGTCACCTGTTACCCACTCTGTAGGAAATTGTGTGAAAAGGGTTGTGGTCATCGTGAGCTCTGTCATCTTCTTCC
upper sequence: Vv17s0000g08560.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ05868 (Selaginella moellendorffii), 3'ss of exon 7
ttctttagtgagagttgactcctaaatttgttgctgtctttgtattattcatcaattccgaca-aaatttggctaaatatttagaaattggattgatgcagGTCTCTTATATGATATTGCAAAGGGTATCCCCAGTTACCCACTCTGTGGGTAATTGTGTTAAGCGGGTGGTGGTCATTGTTACTTCTGTTCTCTTCTTCC
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--------------------------------------------------gtttgctctgatgcaagtttagcgttgtttctgaaggacgattt---gcagGTGTCCTACATGATATTGCAAAGGGTATCGCCGGTTACGCACTCCGTTGGAAACTGTGTCAAGCGCGTGATTGTGATTGTAACTTCAGTCATCTTCTTTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattcatcaattccgacaaaatttggctaaatatttagaaattggattgatgcagGTCTCTTATATGATATTGCAAAGGGTATCCCCAGTTACCCACTCTGTGGGTAATTGTGTTAAGCGGGTGGTGGTCATTGTTACTTCTGTTCTCTTCTTCC
taaatatttagaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttctttagtgagagttgactcctaaatttgttgctgtctttgtattattcatcaattccgacaaaatttggctaaatatttagaaattggattgatgcagGTCTCTTATATGATATTGCAAAGGGTATCCCCAGTTACCCACTCTGTGGGTAATTGTGTTAAGCGGGTGGTGGTCATTGTTACTTCTGTTCTCTTCTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - ctcctaa
- - - - - - - - - - - - - - - -tgctgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - caattcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaatt