Sequence
atgc intronic sequence ATGC exonic sequencegtcagaatggcagtcttgcaaatgcttatgatgcaagaagctggcttttaccttcagttgttgaatgctttattttgtttctactggccagGTTCTTGCTCTCAATGGTAAGCCTGTGAAGAATCTGAAGAGCTTGGCCAACATGGTAGAGAGCTGTGATGACGAATTTTTGAAATTTGATCTAGAATACC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g07900.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os02g50880.1 (Oryza sativa), 3'ss of exon 7
--gtcagaatggcagtcttgcaaatgcttatgatgcaagaagctggcttttaccttcagttgt--tgaatgct---ttattttgttt-ctactggc--cagGTTCTTGCTCTCAATGGTAAGCCTGTGAAGAATCTGAAGAGCTTGGCCAACATGGTAGAGAGCTGTGATGACGAATTTTTGAAATTTGATCTAGAATACC
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gtttctgaaagccaaaacaactagcact-atgatatttgtaatgcctttccatccttatttttggtgaatggtgataaagcatgtttactactgtcaatagGTCCTTGCTTTCAATGGTCAGCCTGTGAAGAATTTGAAGAACTTAGTGTCAATGGTTGAAAATTGCAAGGATGAATTCTTGAAGTTTGATCTGGAGTATG
upper sequence: Vv17s0000g07900.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G09970.1 (Glycine max), 3'ss of exon 7
gtcag-aatggcagtcttgcaaatg-----cttatgatgcaagaagctg-----gcttttaccttcagttgttgaatgctttattttgtttcta-ctggccagGTTCTTGCTCTCAATGGTAAGCCTGTGAAGAATCTGAAGAGCTTGGCCAACATGGTAGAGAGCTGTGATGACGAATTTTTGAAATTTGATCTAGAATACC
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gttagtaatggatatgttccatctttttgccttttcttgctgacagctatatcagcttaaccgttcagttgtttactggtttttattctgtatatctgtgaagGTCCTTGCTTTCAATGGTCAACCAGTGAAAAACCTGAAGAGCTTAGCCACTATGGTAGAGAGCTGCAATGATGAATATCTAAAATTTGATCTAGATTATG
upper sequence: Vv17s0000g07900.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA05G01930.1 (Glycine max), 3'ss of exon 7
----------gtcagaat--ggcagtcttgcaaatgcttatgatgcaagaagctggcttttaccttcagttgttgaatgctttattttgtttcta-ctggccagGTTCTTGCTCTCAATGGTAAGCCTGTGAAGAATCTGAAGAGCTTGGCCAACATGGTAGAGAGCTGTGATGACGAATTTTTGAAATTTGATCTAGAATACC
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gttggtaatggttatgttccatcttttttgcttttccttgctgacagctatattggcttaactgctcagttttttactggtttttattctgtatatctgtgaagGTCCTTGCTTTCAATGGTCAACCAGTGAAAAACCTGAAGAGCCTAGCCACTATGGTAGAGAGCTGCAATGATGAATATCTAAAATTTGATCTAGATTATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaagctggcttttaccttcagttgttgaatgctttattttgtttctactggccagGTTCTTGCTCTCAATGGTAAGCCTGTGAAGAATCTGAAGAGCTTGGCCAACATGGTAGAGAGCTGTGATGACGAATTTTTGAAATTTGATCTAGAATACC
ctttattttgtttct CT-rich tract
tttattttgtttcta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcagaatggcagtcttgcaaatgcttatgatgcaagaagctggcttttaccttcagttgttgaatgctttattttgtttctactggccagGTTCTTGCTCTCAATGGTAAGCCTGTGAAGAATCTGAAGAGCTTGGCCAACATGGTAGAGAGCTGTGATGACGAATTTTTGAAATTTGATCTAGAATACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT