Sequence
atgc intronic sequence ATGC exonic sequencegtaagcatgtagaaatattcatggtattgcttgattaggttttgaattattgttgatcattagtttcatctgtattgaagagacagtggcttctcatatggttgcttattgcttattgcttattggcagAGTGGTTGTTGGATGGTCTTGCTGGTTTTCTGACTGATTCATTTGTTAAGCGATTTCTGGGAAATAATGAGGCACGCTACCGGAGATACAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os09g24440.1 (Oryza sativa), 3'ss of exon 7
gtaagcatgtagaaatattcatggtattgcttgattaggttttgaattattgttgatcattagtttcatctgtattgaagagacagtggcttctcatatggttgcttattgcttattgcttattggcagAGTGGTTGTTGGATGGTCTTGCTGGTTTTCTGACTGATTCATTTGTTAAGCGATTTCTGGGAAATAATGAGGCACGCTACCGGAGATACAAG
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------------------------------gtaagtcagctctgcggctctgcttataatatatacctatagtattcgcaactagataaaatg-catctgacggtttaatgttttttttttgt--gcagAGTGGTTATTGGATGGTTTGGCTGGTTTTCTCACTGAGCATTTTGTCAAGCGTTATCTTGGCAATAATGAGGCACGATATAGGCGTTTCAAG
upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G13080.1 (Glycine max), 3'ss of exon 7
gtaagcatgtagaaatattcatggtattgcttgattaggttttgaattattgttgatcattagtttcatctgtattgaagagacagtggcttctc--atatggttgcttattgcttattgcttattggcagAGTGGTTGTTGGATGGTCTTGCTGGTTTTCTGACTGATTCATTTGTTAAGCGATTTCTGGGAAATAATGAGGCACGCTACCGGAGATACAAG
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----------gtaatttatcagagtatattttgattgttgttttgatt-----tgat--ttgtttctttgtaaattcagcagattgtgtttcctctagtgtgattggtgaatgctt--tgca-atttgcagAGTGGCTCTTGGATGGACTTGCTGGTTTCTTGACAGATTTTTTTATTAAGAAACATTTGGGAAATAATGAGGCACGGTACAGGAGATACAAG
upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA05G07920.1 (Glycine max), 3'ss of exon 7
gtaagcatgtagaaatattcatggtattgcttgattaggttttgaattattgttgatcattagtttcatctgtattgaagagacagtggcttctc--atatggttgcttattgcttattgcttattggcagAGTGGTTGTTGGATGGTCTTGCTGGTTTTCTGACTGATTCATTTGTTAAGCGATTTCTGGGAAATAATGAGGCACGCTACCGGAGATACAAG
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----------gtaacttatcagaggatattttgattgttgttttaatt-----tgat--ttgtttctttgtaaattcagcagattgtgtttcctctagtgtgattggtgaatgctttgcacttt---gcagAGTGGCTCTTGGATGGACTTGCTGGTTTCTTGACAGATTTTTTTATTAAGAAACATTTGGGAAACAATGAGGCACGGTACAGGAGATACAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgaagagacagtggcttctcatatggttgcttattgcttattgcttattggcagAGTGGTTGTTGGATGGTCTTGCTGGTTTTCTGACTGATTCATTTGTTAAGCGATTTCTGGGAAATAATGAGGCACGCTACCGGAGATACAAG
ttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagcatgtagaaatattcatggtattgcttgattaggttttgaattattgttgatcattagtttcatctgtattgaagagacagtggcttctcatatggttgcttattgcttattgcttattggcagAGTGGTTGTTGGATGGTCTTGCTGGTTTTCTGACTGATTCATTTGTTAAGCGATTTCTGGGAAATAATGAGGCACGCTACCGGAGATACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT