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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaaaacttgctcatgcacctactagagagagaacaaaataaatgggtgttggattctagatgtttaacaaaggtgtcttttcagTTGGATTTCACATTTCAAAATGGTGTGGAAGCTGTGCGGATTCTTTTGCTTGAGGGATTTAATAAAAGCGCAAGTTTTGTGAACACTGCCAAATCCTTGG

Basic information

species Vitis vinifera
transcript Vv17s0000g03980.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g03980.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA05G35220.1 (Glycine max), 3'ss of exon 7
gtatgta-----aaacttgctcatgcacctactagaga-gagaacaaaataaatgggtgttgg---------attctagatgtttaacaaaggtgtcttttcagTTGGATTTCACATTTCAAAATGGTGTGGAAGCTGTGCGGATTCTTTTGCTTGAGGGATTTAATAAAAGCGCAAGTTTTGTGAACACTGCCAAATCCTTGG
|||||||         ||  || |  |  |  || ||  |  |||  |  || |||   | ||          ||||| |||||  | |||  ||||||| |||||| |||| ||||| ||| ||||  | ||||||||||||||||||||||||||||||||| ||||||| ||||  ||||| || | |||||||    | |
gtatgtatctgttttttttttctttaattttttaaaggtgcaaactgacaaactggccctcggcacatggaagttctaaatgtt-gataaaaatgtcttt-cagTTGAATTTTACATTACAAGATGGATTAGAAGCTGTGCGGATTCTTTTGCTTGAGGGATTTGATAAAAGTGCAACATTTGTTAATAGTGCCAAAAAGATAG

upper sequence: Vv17s0000g03980.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G04500.1 (Glycine max), 3'ss of exon 7
gtatgtaaaacttgctcatgcacctactagagagagaacaaaataaatgggtgttggattctagatgtttaacaaaggtgtcttttcagTTGGATTTCACATTTCAAAATGGTGTGGAAGCTGTGCGGATTCTTTTGCTTGAGGGATTTAATAAAAGCGCAAGTTTTGTGAACACTGCCAAATCCTTGG
|||| |     ||  |  |  |  |   |       |||         |    | | | |    |   || | |||  ||||||| |||||| |||| ||||| | | ||||  | ||||||||||||||||||||||||||||||||| ||||||| ||||  ||||| || | |||||||    | |
gtatctctttttttttt-taaaggtgtaaactgacaaactggccctcagcacatggaagttctaaaagttgataaaaatgtcttt-cagTTGAATTTTACATTACGAGATGGATTAGAAGCTGTGCGGATTCTTTTGCTTGAGGGATTTGATAAAAGTGCAACATTTGTTAATAGTGCCAAAAAGATAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71883924|gb|DT032979.1|DT032979
EST:     ATACTGCAAACTTTGTTCTTAGTCCATTCAGTAAACGAGAACGTGAAGAG                         TTGGATTTCACATTTCAAAATGGTGTGGAAGCTGTGCGGATTCTTTTGCTT
genomic: ATACTGCAAACTTTGTTCTTAGTCCATTCAGTAAACGAGAACGTGAAGAGgtatgtaaaa ... gtcttttcagTTGGATTTCACATTTCAAAATGGTGTGGAAGCTGTGCGGATTCTTTTGCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaacaaaataaatgggtgttggattctagatgtttaacaaaggtgtcttttcagTTGGATTTCACATTTCAAAATGGTGTGGAAGCTGTGCGGATTCTTTTGCTTGAGGGATTTAATAAAAGCGCAAGTTTTGTGAACACTGCCAAATCCTTGG
                                gtttaac  putative branch site (score: 3)
                                            tgtcttttc  putative PPT
     aaaataaat  TA-rich tract