Sequence
atgc intronic sequence ATGC exonic sequence...tgtacataatagtaatagatgatttattgtcactttattttagtctattttaattgttttagtgatgcttagaaaccttatacacacttctttccatcagATGATTATGGCAATGCGGACGTTATATCAGAAGTGCAAACTGGTACATGGAGACCTCAGTGAATATAACATACTTTATTTTGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g01390.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G39750.1 (Glycine max), 3'ss of exon 7
tgtacataatagtaatagatgatttattgtcacttta---tttta--gtctatttta---attgttttagtgatgcttagaaaccttatacacacttctttccatcagATGATTATGGCAATGCGGACGTTATATCAGAAGTGCAAACTGGTACATGGAGACCTCAGTGAATATAACATACTTTATTTTGAG
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---tcttgatggaaacccttctcttttaggtttctaagggtttgaaggtctattccatgcatcgaataattaaagtt--gaaatcatgagca---ttttttgtttcagATTATTATTGCAATGCGGACATTGTATCAGAAATGCAAATTGGTGCATGGTGATCTCAGTGAATATAATATACTTTATTTTGAG
upper sequence: Vv17s0000g01390.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G46440.1 (Glycine max), 3'ss of exon 7
tgtacataatagtaatagatgatttattgtcacttta---ttttagtctattttaattgt-tttagtgatgcttagaaaccttatacacacttctttccatcagATGATTATGGCAATGCGGACGTTATATCAGAAGTGCAAACTGGTACATGGAGACCTCAGTGAATATAACATACTTTATTTTGAG-
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----cttgatggaaacacttctgttttaggtttctaagggtttgagggtcttttccatgcatcaaataattacagttgaaatcgtgagcattttttgtt-tcagaTTATTATTGCAATGCGGACATTGTATCAGAAATGCAAATTGGTGCACGGTGATCTCAGTGAATATAATATACTTTATTTTGAGG
upper sequence: Vv17s0000g01390.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT2G24990.1 (Arabidopsis thaliana), 3'ss of exon 7
-tgtacataatagtaatagatgatttattgtcactttattttagtct----attttaattgttttagtgatgcttagaaaccttatacacacttctttccat--cagATGATTATGGCAATGCGGACGTTATATCAGAAGTGCAAACTGGTACATGGAGACCTCAGTGAATATAACATACTTTATTTTGAG
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gtatgtcttattttctcatttagagggtcctgagtgtattatggcattacagtcaggattcatctctttatggtctctttactgacatccttttttctgcatttcagTTGATAATTCAAATGCGAGTATTATATCAGAAGTGCAAATTGGTGCATGGAGATCTCAGTGAGTATAACATACTTTATTTTGAG
upper sequence: Vv17s0000g01390.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G37350.1 (Arabidopsis thaliana), 3'ss of exon 7
tgtacataatagtaatagatgatttattgtcactttattttagtctattttaattgttttagtgatgcttagaaaccttatacacacttctttcca--tcagATGATTATGGCAATGCGGACGTTATATCAGAAGTGCAAACTGGTACATGGAGACCTCAGTGAATATAACATACTTTATTTTGAG
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-gtatgtcttattttc---tcatttagagggtcctgagtgta--tcattgtaat-actttacttagacctgatatgtcacgattaatctcttcttatttcagTTGATAATTCAAATGCGAGTATTATATCAGAAGTGCAAATTAGTGCATGGGGATCTCAGTGAGTATAACATACTTTATTTTGAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattttaattgttttagtgatgcttagaaaccttatacacacttctttccatcagATGATTATGGCAATGCGGACGTTATATCAGAAGTGCAAACTGGTACATGGAGACCTCAGTGAATATAACATACTTTATTTTGAG
ttttaat putative branch site (score: 3)
cacttctttccatc putative PPT
taattgtttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtacataatagtaatagatgatttattgtcactttattttagtctattttaattgttttagtgatgcttagaaaccttatacacacttctttccatcagATGATTATGGCAATGCGGACGTTATATCAGAAGTGCAAACTGGTACATGGAGACCTCAGTGAATATAACATACTTTATTTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacacac