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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggggatctgttagatggtatcttttgctttctcgtgttttaaacattagaagcaatcccaaatgaaaaggcttgatatgctgcataagtgaagctttagataaattatttttcttctccttcttttggttttcaagGTCTGCTCTTCTACTCAAAAGAACTTGCAATCCAGTGGTGCATGCTACAGATATGCTAGCATGACTTATAAG

Basic information

species Vitis vinifera
transcript Vv17s0000g00500.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34542640|gb|CF510872.1|CF510872
EST:     GGGAACTCTGCAAACTCCCAGAGATTGTTGCAATCTGCAAGAAATATAAG                         GTCTGCTCTTCTACTCAAAAGAACTTGCAATCCAGCGGTGCATGCTACAGA
genomic: GGGAACTCTGCAAACTCCCAGAGATTGTTGCAATCTGCAAGAAATATAAGgttggggatc ... ggttttcaagGTCTGCTCTTCTACTCAAAAGAACTTGCAATCCAGTGGTGCATGCTACAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcataagtgaagctttagataaattatttttcttctccttcttttggttttcaagGTCTGCTCTTCTACTCAAAAGAACTTGCAATCCAGTGGTGCATGCTACAGATATGCTAGCATGACTTATAAG
                       ttatttttcttctcct  CT-rich tract
             tttagataaattattt  TA-rich tract