1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aaaaaggcaggaatataacaggataaattaacacattcaatataatttgttggagttctcttcctaatgatctgtatgttcaatttttcatgtgattcagATTCGTGATTTTGAATATAGTCCAGAAACACAAGAGAGTAGGAAGCAGGAGTTGGAAAAACTGATGCTAGATCAGGACACGATTAGAACCTCTCTTTTGC
species | Vitis vinifera |
transcript | Vv17s0000g00460.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTCGTGTTGCTGACAATTTTAAGACTAGCGCACGAGAGAGAGGTTTTCAA ATTCGTGATTTTGAATATAGTCCAGAAACACAAGAGAGTAGGAAGCAGGAG
genomic: GTCGTGTTGCTGACAATTTTAAGACTAGCGCACGAGAGAGAGGTTTTCAAgtgagtttct ... tgtgattcagATTCGTGATTTTGAATATAGTCCAGAAACACAAGAGAGTAGGAAGCAGGAG
tttgttggagttctcttcctaatgatctgtatgttcaatttttcatgtgattcagATTCGTGATTTTGAATATAGTCCAGAAACACAAGAGAGTAGGAAGCAGGAGTTGGAAAAACTGATGCTAGATCAGGACACGATTAGAACCTCTCTTTTGC
tcctaat putative branch site (score: 2)
tttttcat putative PPT
tatgttcaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaaggcaggaatataacaggataaattaacacattcaatataatttgttggagttctcttcctaatgatctgtatgttcaatttttcatgtgattcagATTCGTGATTTTGAATATAGTCCAGAAACACAAGAGAGTAGGAAGCAGGAGTTGGAAAAACTGATGCTAGATCAGGACACGATTAGAACCTCTCTTTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - gcaggaa
- - - - - - - - aacagga
- - - - - - - - - - - - aaattaa
- - - - - - - - - - - - - - - -cacattc
- - - - - - - - - - - - - - - - - - - - - - - ttgttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtatg