1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagccctcaaatcttgtctcaggccagagaaaaaaaaaatgaagtataataaatatactaattaattctctttcttagacacacccacaaacacttgtatcatactctcgtaattaacccttacttttggtcttttccagTGTGTGTGTGAGGAGGATTTGGAAGAGAACTTGGGAGAAAAGAAACCTTAGAAGACATGGAATTGTTTTGTTCTTAGGATGAGTTCCAATGGAGGGGGCT
species | Vitis vinifera |
transcript | Vv17s0000g00430.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGTGTTCTTTCAATTAAAATAATAAACTGAGCTGCCCTACCAACATCTG TGTGTGTTTGAGGAGGATTTGGAAGAGAACTTGGGAGAAAAGAAACCTTAGEST: gi|22012944|gb|BQ797978.1|BQ797978
genomic: TTGTGTTCTTTCAATTAAAATAATAAACTGAGCTGCCCTACCAACATCTGgtaagccctc ... tcttttccagTGTGTGTGTGAGGAGGATTTGGAAGAGAACTTGGGAGAAAAGAAACCTTAG
EST: TTGTGTTCTTTCAATTAAAATAATAAACTGAGCTGCCCTACCAACATCTG TGTGTGTTTGAGGAGGATTTGGAAGAGAACTTGGGAGAAAAGAAACCTTAGEST: gi|110369449|gb|EC933609.1|EC933609
genomic: TTGTGTTCTTTCAATTAAAATAATAAACTGAGCTGCCCTACCAACATCTGgtaagccctc ... tcttttccagTGTGTGTGTGAGGAGGATTTGGAAGAGAACTTGGGAGAAAAGAAACCTTAG
EST: TTGTGTTCTTTCAATTAAAATAATAAACTGAGCTGCCCTACCAACATCNN NNNNNNNNNNAGGAGGATTTGGAAGAGAACTTGGGAGAAAAGAAACCTTAG
genomic: TTGTGTTCTTTCAATTAAAATAATAAACTGAGCTGCCCTACCAACATCTGgtaagccctc ... tcttttccagTGTGTGTGTGAGGAGGATTTGGAAGAGAACTTGGGAGAAAAGAAACCTTAG
cacaaacacttgtatcatactctcgtaattaacccttacttttggtcttttccagTGTGTGTGTGAGGAGGATTTGGAAGAGAACTTGGGAGAAAAGAAACCTTAGAAGACATGGAATTGTTTTGTTCTTAGGATGAGTTCCAATGGAGGGGGCT
cccttacttttggtct CT-rich tract
taattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccctcaaatcttgtctcaggccagagaaaaaaaaaatgaagtataataaatatactaattaattctctttcttagacacacccacaaacacttgtatcatactctcgtaattaacccttacttttggtcttttccagTGTGTGTGTGAGGAGGATTTGGAAGAGAACTTGGGAGAAAAGAAACCTTAGAAGACATGGAATTGTTTTGTTCTTAGGATGAGTTCCAATGGAGGGGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG