1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aagattgatgggtatgtgatgtgagaggaggggagggtggagattttgagaggcaggtactttgccaatcaactctatcaaaattcctgtttatgtgcagGCTATGAGTGAAAAAGAAGCAATGGAAATGAAAGCCACATTGGAATCCACGGGAGAGGTAGGGTTCCATGTCTGCACTCTTGGGAAAGATGTCACTATAA
species | Vitis vinifera |
transcript | Vv17s0000g00160.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGGGCTTGCATTCAAGGGAAACCAAAAAATGGTTGTGGAAGCGTTGGAG GCTATGAGTGAAAAAGAAGCAATGGAAATGAAAGCCACATTGGAATCCACGEST: gi|46917791|gb|CN547120.1|CN547120
genomic: TGGGGCTTGCATTCAAGGGAAACCAAAAAATGGTTGTGGAAGCGTTGGAGgtaagtattg ... ttatgtgcagGCTATGAGTGAAAAAGAAGCAATGGAAATGAAAGCCACATTGGAATCCACG
EST: TGGGGCTTGCATTCAAGGGAAACCAAAAAATGGTTGTGGAAGCGTTGGAG GCTATGAGTGAAAAAGAAGCAATGGAAATGAAAGCCACATTGGAATCCACG
genomic: TGGGGCTTGCATTCAAGGGAAACCAAAAAATGGTTGTGGAAGCGTTGGAGgtaagtattg ... ttatgtgcagGCTATGAGTGAAAAAGAAGCAATGGAAATGAAAGCCACATTGGAATCCACG
ttgagaggcaggtactttgccaatcaactctatcaaaattcctgtttatgtgcagGCTATGAGTGAAAAAGAAGCAATGGAAATGAAAGCCACATTGGAATCCACGGGAGAGGTAGGGTTCCATGTCTGCACTCTTGGGAAAGATGTCACTATAA
ttcctgttt CT-rich tract
tatcaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagattgatgggtatgtgatgtgagaggaggggagggtggagattttgagaggcaggtactttgccaatcaactctatcaaaattcctgtttatgtgcagGCTATGAGTGAAAAAGAAGCAATGGAAATGAAAGCCACATTGGAATCCACGGGAGAGGTAGGGTTCCATGTCTGCACTCTTGGGAAAGATGTCACTATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - ttgatgg
- - - - - -gtatgtg
- - - - - - - - - - - - - - - gggaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - gcaggta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caactct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcaaaat