1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgatctgggaatttccatataaataatgaaattgttctttttccttaattttttttacctcttcagtgtttatatgtttgtattcctacttttaacagATATCCGAGGTTGTCAATAGTATGAAAGACTTGATTGACTTCTGCAGGGAGAACAAAGTTGGGCCAATTG
species | Vitis vinifera |
transcript | Vv16s0100g00500.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGTCGCTGAATGATCTGGGATTTTCCAAAAGATATGTGAGGTGCTTGCAG ATATCTGAGGTTGTCAATAGTATGAAAGACTTGATTGACTTCTGCAGGGAGEST: gi|161705769|gb|FC056640.1|FC056640
genomic: AGTCACTGAATGATCTGGGATTTTCCAAAAGATATGTGAGGTGCTTGCAGgtatgatctg ... cttttaacagATATCCGAGGTTGTCAATAGTATGAAAGACTTGATTGACTTCTGCAGGGAG
EST: AGTCGCTGAATGATCTGGGATTTTCCAAAAGATATGTGAGGTGCTTGCAG ATATCCGAAGTTGTCAATAGTATGAAAGACTTGATTGACTTCTGCAGGGAGEST: gi|161720327|gb|FC071180.1|FC071180
genomic: AGTCACTGAATGATCTGGGATTTTCCAAAAGATATGTGAGGTGCTTGCAGgtatgatctg ... cttttaacagATATCCGAGGTTGTCAATAGTATGAAAGACTTGATTGACTTCTGCAGGGAG
EST: AGTCGCTGAATGATCTGGGATTTTCCAAAAGATATGTGAGGTGCTTGCAG ATATCCGAGGTTGTCAATAGTATGAAAGACTTGATTGACTTCTGCAGGGAGEST: gi|161708994|gb|FC058786.1|FC058786
genomic: AGTCACTGAATGATCTGGGATTTTCCAAAAGATATGTGAGGTGCTTGCAGgtatgatctg ... cttttaacagATATCCGAGGTTGTCAATAGTATGAAAGACTTGATTGACTTCTGCAGGGAG
EST: AGTCGCTGAATGATCTGGGATTTTCCAAAAGATATGTGAGGTGCTTGCAG ATATCCGAGGTTGTCAATAGTATGAAAGACTTGATTGACTTCTGCAGGGAGEST: gi|161710271|gb|FC060655.1|FC060655
genomic: AGTCACTGAATGATCTGGGATTTTCCAAAAGATATGTGAGGTGCTTGCAGgtatgatctg ... cttttaacagATATCCGAGGTTGTCAATAGTATGAAAGACTTGATTGACTTCTGCAGGGAG
EST: AGTCGCTGAATGATCTGGGATTTTCCAAAAGATATGTGAGGTGCTTGCAG ATATCCGAGGTTGTCAATAGTATGAAAGACTTGATTGACTTCTGCAGGGAG
genomic: AGTCACTGAATGATCTGGGATTTTCCAAAAGATATGTGAGGTGCTTGCAGgtatgatctg ... cttttaacagATATCCGAGGTTGTCAATAGTATGAAAGACTTGATTGACTTCTGCAGGGAG
cttaattttttttacctcttcagtgtttatatgtttgtattcctacttttaacagATATCCGAGGTTGTCAATAGTATGAAAGACTTGATTGACTTCTGCAGGGAGAACAAAGTTGGGCCAATTG
ccttaat putative branch site (score: 4)
ttcctactttt putative PPT
tttatatgtttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatctgggaatttccatataaataatgaaattgttctttttccttaattttttttacctcttcagtgtttatatgtttgtattcctacttttaacagATATCCGAGGTTGTCAATAGTATGAAAGACTTGATTGACTTCTGCAGGGAGAACAAAGTTGGGCCAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA