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...ttacattgacctccatgttctttctattctatgcttctacttttgtttagggcttgattttgtatgtttactgattgcggtttttcttttggggcaacagGGAGGTCGATATCGTTGGCATATTCCGCTATAGGAACACATGGCCGCTCTGCCTTGAGTTTTTGAGGAGTGGCAAGATTGATGTTAAACCCCTGATAACC
species | Vitis vinifera |
transcript | Vv16s0100g00290.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGTTTGGCCCAGAGTGAGATGACTGTTCCTCTCACTCCAGCTGCTGCCAG GGAGGTCGATATTGTTGGCATATTCCGCTATAGGAACACATGGCCGCTCTGEST: gi|110702886|gb|EE079247.1|EE079247
genomic: GGTTTGGCCCAGAGTGAGATGACTGTTCCTCTCACTCCAGCTGCTGCCAGgtatttgatc ... ggggcaacagGGAGGTCGATATCGTTGGCATATTCCGCTATAGGAACACATGGCCGCTCTG
EST: GGTTTGGCCCAGAGTGAGATGACTGTTCCTCTCACTCCAGCTGCTGCCAG GGAAGTCGATATCGTTGGCATATTCCGCTATAGGTACACATGGCCGCTCTGEST: gi|37190683|gb|CF610032.1|CF610032
genomic: GGTTTGGCCCAGAGTGAGATGACTGTTCCTCTCACTCCAGCTGCTGCCAGgtatttgatc ... ggggcaacagGGAGGTCGATATCGTTGGCATATTCCGCTATAGGAACACATGGCCGCTCTG
EST: GGTTTGGCCCAGAGTGAGATGACTGTTCCTCTCACTCCAGCTGCTGCCAG GGAGGTCGATATCGTTGGCATATTCCGCTATAGGAACACATGGCCGCTCTGEST: gi|37190343|gb|CF609692.1|CF609692
genomic: GGTTTGGCCCAGAGTGAGATGACTGTTCCTCTCACTCCAGCTGCTGCCAGgtatttgatc ... ggggcaacagGGAGGTCGATATCGTTGGCATATTCCGCTATAGGAACACATGGCCGCTCTG
EST: GGTTTGGCCCAGAGTGAGATGACTGTTCCTCTCACTCCAGCTGCTGCCAG GGAGGTCGATATCGTTGGCATATTCCGCTATAGGAACACATGGCCGCTCTG
genomic: GGTTTGGCCCAGAGTGAGATGACTGTTCCTCTCACTCCAGCTGCTGCCAGgtatttgatc ... ggggcaacagGGAGGTCGATATCGTTGGCATATTCCGCTATAGGAACACATGGCCGCTCTG
tttagggcttgattttgtatgtttactgattgcggtttttcttttggggcaacagGGAGGTCGATATCGTTGGCATATTCCGCTATAGGAACACATGGCCGCTCTGCCTTGAGTTTTTGAGGAGTGGCAAGATTGATGTTAAACCCCTGATAACC
tactgat putative branch site (score: 2)
tttttcttttg putative PPT
attttgtatgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacattgacctccatgttctttctattctatgcttctacttttgtttagggcttgattttgtatgtttactgattgcggtttttcttttggggcaacagGGAGGTCGATATCGTTGGCATATTCCGCTATAGGAACACATGGCCGCTCTGCCTTGAGTTTTTGAGGAGTGGCAAGATTGATGTTAAACCCCTGATAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - acctcca
- - - - - - - - - - - - - - ctatgct
- - - - - - - - - - - - - - - - - - - - - - - - -gggcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattgc