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gtatttctgaatctacttgtcacttctagtgtggttgagagcactaattggaaaatctgtatctgatttacttgtttatttgatgcagGTGACCCAGGCAGAAGTCAAACTTTTCTTTGAATCAATTTGTGGAGAG
species | Vitis vinifera |
transcript | Vv16s0098g01040.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AACGTGAAATGTGCGCCAGGACTATTTACTGTACAAATATTGATAAGAAG GTGACCCAGGCAGAAGTCAAACTTTTCTTTGAATCAATTTGTGGAGAGEST: gi|254917332|gb|GR906158.1|GR906158
genomic: AACGTGAAATGTGCGCCAGGACTATTTACTGTACAAATATTGATAAGAAGgtatttctga ... tttgatgcagGTGACCCAGGCAGAAGTCAAACTTTTCTTTGAATCAATTTGTGGAGAG
EST: AACGTGAAATGTGCGCCAGGACTATTTACTGTACAAATATTGATAAGAAG GTGACCCAGGCAGAAGTCAAACTTTTCTTTGAATCAATTTGTGGAGAGEST: gi|110406292|gb|EC971861.1|EC971861
genomic: AACGTGAAATGTGCGCCAGGACTATTTACTGTACAAATATTGATAAGAAGgtatttctga ... tttgatgcagGTGACCCAGGCAGAAGTCAAACTTTTCTTTGAATCAATTTGTGGAGAG
EST: AACGTGAAATGTGCGCCAGGACTATTTACTGTACAAATATTGATAAGAAG GTGACCCAGGCAGAAGTCAAACTTTTCTTTGAATCAATTTGTGGAGAGEST: gi|110371491|gb|EC935557.1|EC935557
genomic: AACGTGAAATGTGCGCCAGGACTATTTACTGTACAAATATTGATAAGAAGgtatttctga ... tttgatgcagGTGACCCAGGCAGAAGTCAAACTTTTCTTTGAATCAATTTGTGGAGAG
EST: AACGTGAAATGTGCGCCAGGACTATTTACTGTACAAATATTGATAAGAAG GTGACCCAGGCAGAAGTCAAACTTTTCTTTGAATCAATTTGTGGAGAGEST: gi|110385680|gb|EC950225.1|EC950225
genomic: AACGTGAAATGTGCGCCAGGACTATTTACTGTACAAATATTGATAAGAAGgtatttctga ... tttgatgcagGTGACCCAGGCAGAAGTCAAACTTTTCTTTGAATCAATTTGTGGAGAG
EST: AACGTGAAATGTGCGCCAGGACTATTTACTGTACAAATATTGATAAGAAG GTGACCCAGGCAGAAGTCAAACTTTTCTTTGAATCAATTTGTGGAGAG
genomic: AACGTGAAATGTGCGCCAGGACTATTTACTGTACAAATATTGATAAGAAGgtatttctga ... tttgatgcagGTGACCCAGGCAGAAGTCAAACTTTTCTTTGAATCAATTTGTGGAGAG
gttgagagcactaattggaaaatctgtatctgatttacttgtttatttgatgcagGTGACCCAGGCAGAAGTCAAACTTTTCTTTGAATCAATTTGTGGAGAG
tttattt CT-rich tract
atttacttgtttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttctgaatctacttgtcacttctagtgtggttgagagcactaattggaaaatctgtatctgatttacttgtttatttgatgcagGTGACCCAGGCAGAAGTCAAACTTTTCTTTGAATCAATTTGTGGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA