Sequence
atgc intronic sequence ATGC exonic sequence...acacaatttcatgtccgtagtccaagtgaattctccatattttgaataaagatagatgaatttcacagtgacaattttttgttcctttattgcaatgcagATACACTCTAGGTTCTCTACAAACACATTTCCTAGTTGGGACCGAGCTCAACCCATGCGTGTATTGGGCCACAATGGGGAAATCAACACACTTCGAGGCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA04G41540.1 (Glycine max), 3'ss of exon 7
----acacaat--ttcatgtccgtagtccaagtgaattctccatattttg-aataaagatagatgaatttcacagtgacaattttttgttcctttattgcaatgcagATACACTCTAGGTTCTCTACAAACACATTTCCTAGTTGGGACCGAGCTCAACCCATGCGTGTATTGGGCCACAATGGGGAAATCAACACACTTCGAGGCA
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gaaaaaaaaatcattaatgctcttgattttccgcaacagtttattgtctgtaataagaagtaacca--taaatactgacaattaggaatacat-----gatgtgcagATACATTCACGATTTTCTACAAATACTTTTCCTAGTTGGGATCGTGCTCAACCTATGCGTGTATTGGGCCACAATGGAGAAATCAACACACTTAGAGGGA
upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA06G13280.1 (Glycine max), 3'ss of exon 7
------acacaatttcatgtccgtagtccaagtgaattctccatattttg-aataaagatagatgaatttcacagtgacaattttttgttcctttattgcaatgcagATACACTCTAGGTTCTCTACAAACACATTTCCTAGTTGGGACCGAGCTCAACCCATGCGTGTATTGGGCCACAATGGGGAAATCAACACACTTCGAGGCA
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tgaaaaatattcattaatgctcttaattttccgctacagtttatagtctgtaataagaagaaacca--tagatactgacaattaggcatatct-----gatgtgcagATACATTCACGATTTTCGACAAATACTTTTCCTAGTTGGGATCGTGCTCAACCTATGCGTGTATTGGGCCACAATGGAGAAATCAACACACTTAAAGGAA
upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA19G16450.1 (Glycine max), 3'ss of exon 3
acacaatttcatgtccgtagtccaagtgaattctccatatt-ttgaataaagatagatgaatttcacagtgacaattttttgttcctttattgca-atgcagATACACTCTAGGTTCTCTACAAACACATTTCCTAGTTGGGACCGAGCTCAACCCATGCGTGTATTGGGCCACAATGGGGAAATCAACACACTTCGAGGCA
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--ctggaagaaaaaacatttttgcatttgattttctacactattttattttgttataagaatataatcatgattactgacaatttggtatgcatatgtgcagATACATTCACGGTTTTCTACAAATACTTTCCCTAGCTGGGATCGTGCTCAACCTATGCGTGTATTGGGCCACAATGGAGAAATCAACACACTCAGAGGCA
upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA14G32500.1 (Glycine max), 3'ss of exon 7
--acacaatttcatgtccgtagtccaagtgaattctcca-tattttgaataaagatagatgaatttcacagtgacaattttttgttcctttattgca-atgcagATACACTCTAGGTTCTCTACAAACACATTTCCTAGTTGGGACCGAGCTCAACCCATGCGTGTATTGGGCCACAATGGGGAAATCAACACACTTCGAGGCA
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gaagaaaaaaacatttttgca-tttgatt---ttctacactgttttatattgtgttacaagaatataatcatgattactgacaatttggcatgcatatgtgcagATACACTCACGGTTTTCTACAAATACTTTCCCTAGCTGGGATCGTGCTCAACCTATGCGTGTATTGGGACACAACGGAGAAATCAACACACTCAGAGGCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ataaagatagatgaatttcacagtgacaattttttgttcctttattgcaatgcagATACACTCTAGGTTCTCTACAAACACATTTCCTAGTTGGGACCGAGCTCAACCCATGCGTGTATTGGGCCACAATGGGGAAATCAACACACTTCGAGGCA
ttttttgttcctttat CT-rich tract
aattttttgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acacaatttcatgtccgtagtccaagtgaattctccatattttgaataaagatagatgaatttcacagtgacaattttttgttcctttattgcaatgcagATACACTCTAGGTTCTCTACAAACACATTTCCTAGTTGGGACCGAGCTCAACCCATGCGTGTATTGGGCCACAATGGGGAAATCAACACACTTCGAGGCA
- - - - tcatgtc
- - - - - - - - - - -ccaagtg
- - - - - - - - - - - - - - - -tctccat
- - - - - - - - - - - - - - - - - - - - - -gaataaa