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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtagatcactcatactctaaattctgctggcccaagtaattgggattcaagggtttgtccatttaggtattaagtctcatgtatcacttctaaagctgtagctgtgcttatttgcagATGTATGGAAGGTGCTAATAATCCTCCAAAGCATCGCAGGAATGCTTCTACTTCATCTGATATGAACACTGTTGCTTCCCAATCTACCACTCAAAGTTCA

Basic information

species Vitis vinifera
transcript Vv16s0050g01850.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g01850.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G37380.1 (Glycine max), 3'ss of exon 5
gtatggt-agatcactcatactctaaattctgctggcccaagtaat-tgggattcaagggtttgtccatttaggtattaagtctcatgtatcacttctaaagctgtagctgtgcttatttgcagATGT---ATGGAAGGTGCTAATAATCCTCCAAAGCATCGCAGGAATGCTTCTACTTCATCTGATATGAACACTGTTGCTTCCCAATCTACCACTCAAAGTTCA
   || | | |||   ||     |  || ||  |  || |  || |      ||||    | |  | |||     |||   ||     |   | ||   | || |   |  | | |      ||  ||   || |||  | | |  ||||||||||||| |||||||||||| |||||| ||| ||||| ||    |    |||||||                   
---tgattatatcttccagttcttgtatcct--ttacctagatattgccaacttcacatatataactattatatcattgtatcatgaatggtaatttctatgcagGTACACTACATCGACAGAGTAGTGAAATTGAAAATTCCAGCAATCCTCCAAAGCTTCGCAGGAATGCCTCTACTGCATGTGATACGA---TTAGCACTTCCCA-------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71861211|gb|DT010266.1|DT010266
EST:     GCACATTATCTAGGCAAAGCAGTGGTGCCGATATTAAATCAAG                         ATGTATGGAAGGTGCTAAT
genomic: GCACATTATCTAGGCAAAGCAGTGGTGCCGATATTAAATCAAGgtatggtaga ... ttatttgcagATGTATGGAAGGTGCTAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaggtattaagtctcatgtatcacttctaaagctgtagctgtgcttatttgcagATGTATGGAAGGTGCTAATAATCCTCCAAAGCATCGCAGGAATGCTTCTACTTCATCTGATATGAACACTGTTGCTTCCCAATCTACCACTCAAAGTTCA
                         ttctaaa  putative branch site (score: 2)
                                            cttattt  putative PPT
     tattaagt  TA-rich tract