1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cagtgttgtatttgttgctctcacctcatactcagtcacttgttcatgtgtatgttgcttctcatgtgccattatgttttgcttttttctctctatacagATGGCAGTTGTACAACGCACTTCTCAAGGACATGGATGGTTGAGGCCTGCAATTGGTGTTGTTGAGCTTTCTCAATGTATCATTCAG
species | Vitis vinifera |
transcript | Vv16s0050g01460.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCAGACGTGTGCTGGAACTCTCACCTCGCCTTCTTGAAGAACTAATGAAG ATGGCAGTTATACCACGCGCTTCTCAAGGACATGGATGGTTGAGGCCTGCAEST: gi|161720446|gb|FC070213.1|FC070213
genomic: TCAGACGTGTGCTGGAACTCTCACCTCGCCTTCTTGAAGAACTAATGAAGgtgaattctg ... ctctatacagATGGCAGTTGTACAACGCACTTCTCAAGGACATGGATGGTTGAGGCCTGCA
EST: TCAGACGTGTGCTGGAACTCTCACCTCGCCTTCTTGAAGAACTAATGAAG ATGGCAGTTGTACAACGCACTTCTCAAGGACATGGATGGTTGAGGCCTGCAEST: gi|29782441|gb|CB347748.2|CB347748
genomic: TCAGACGTGTGCTGGAACTCTCACCTCGCCTTCTTGAAGAACTAATGAAGgtgaattctg ... ctctatacagATGGCAGTTGTACAACGCACTTCTCAAGGACATGGATGGTTGAGGCCTGCA
EST: TCAGACGTGTGCTGGAACTCTCACCTCGCCTTCTTGAAGAACTAATGAAG ATGGCAGTTATACCACGCACTTCTCAAGGACATGGATGGTTGAGGCCTGCA
genomic: TCAGACGTGTGCTGGAACTCTCACCTCGCCTTCTTGAAGAACTAATGAAGgtgaattctg ... ctctatacagATGGCAGTTGTACAACGCACTTCTCAAGGACATGGATGGTTGAGGCCTGCA
atgtgtatgttgcttctcatgtgccattatgttttgcttttttctctctatacagATGGCAGTTGTACAACGCACTTCTCAAGGACATGGATGGTTGAGGCCTGCAATTGGTGTTGTTGAGCTTTCTCAATGTATCATTCAG
ttatgttttgcttttt CT-rich tract
attatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagtgttgtatttgttgctctcacctcatactcagtcacttgttcatgtgtatgttgcttctcatgtgccattatgttttgcttttttctctctatacagATGGCAGTTGTACAACGCACTTCTCAAGGACATGGATGGTTGAGGCCTGCAATTGGTGTTGTTGAGCTTTCTCAATGTATCATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - tgttgct
- - - - - - - - -ctctcac
- - - - - - - - - - - - - - - - cagtcac
- - - - - - - - - - - - - - - - - - - - - - catgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtgc