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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagaatgttttttcttgccataaccttatctcttcatttatgacaagcttttgatagtatttcttacttctctgttcagttgttcgctcagGTTATAAGGAATTCAAATGGTTGCAACCTTGCTGTGGATATTTGGAGTCTAGGGTGCACAGTTTTGGAAATGGCCACAACAAAACCACCCTGGAGTCAGT

Basic information

species Vitis vinifera
transcript Vv16s0050g00770.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g00770.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA20G30100.2 (Glycine max), 3'ss of exon 2
gtcagaatgttttttcttgccataaccttatctcttcatttatgacaagcttttgatagtatttcttacttctctgttcagttgttcgctcagGTTATAAGGAATTCAAATGGTTGCAACCTTGCTGTGGATATTTGGAGTCTAGGGTGCACAGTTTTGGAAATGGCCACAACAAAACCACCCTGGAGTCAGT
||   ||| |||| | |   | |    || ||| ||   || |||     | ||     | |  || | |    |       || |   |||||||||||  ||||| ||||| ||||||||||| |||||||| |||||||| || |||||||||||||||||||| ||||| ||||| || |||  |||||
gttctaatattttctttaaacct---tttttcttttatattttgattgtgtcttagatctgtggctcagtatcattgctttctgatgattcagGTTATAAAAAATTCTAATGGATGCAACCTTGCGGTGGATATATGGAGTCTTGGATGCACAGTTTTGGAAATGGCTACAACCAAACCTCCTTGGTTTCAGT

upper sequence: Vv16s0050g00770.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G24970.2 (Glycine max), 3'ss of exon 7
gtcagaatgttttttcttgccataaccttatctcttcatttatgacaagcttttgatagtatttcttacttctctgttcagttgttcgctcagGTTATAAGGAATTCAAATGGTTGCAACCTTGCTGTGGATATTTGGAGTCTAGGGTGCACAGTTTTGGAAATGGCCACAACAAAACCACCCTGGAGTCAGT
||   ||| |||| ||| |  |    |   ||| |  |  |   |  |  | ||| |  | |  |||  |    |       || |   |||||||||||  || || |||||||||||||| ||||| ||||| ||||| || || |||||||||||||||||||| ||||| ||||| || ||||||||||
gttgtaatattttctct-gttactttcagttctttatagattcaattacatattggttttgtgacttgatagctttgcattctgatttttcagGTTATAAAAAACTCTAATGGTTGCAACCTAGCTGTTGATATATGGAGCCTTGGATGCACAGTTTTGGAAATGGCTACAACTAAACCTCCTTGGAGTCAGT

upper sequence: Vv16s0050g00770.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G30030.2 (Glycine max), 3'ss of exon 8
gtcagaatgttttttcttgccataaccttatctcttcatttat--gacaagcttttgatagtatttctt-acttctctgttcagttgttcgctcagGTTATAAGGAATTCAAATGGTTGCAACCTTGCTGTGGATATTTGGAGTCTAGGGTGCACAGTTTTGGAAATGGCCACAACAAAACCACCCTGGAGTCAGT
||   ||| |||| |||     ||   ||    ||| ||  ||   |  |  | ||| |  | |  ||| |   || || |   |  ||   |||||||||||  || || |||||||||||||| ||||| ||||| ||||| || || |||||||||||||||||||| ||||| ||||| || ||||||||||
gttgtaatattttctctgt---tagttttggtcctttatagattcaattacatcttggttttgtgactttatagctttgctttctgattt-ttcagGTTATAAAAAACTCTAATGGTTGCAACCTAGCTGTTGATATATGGAGCCTTGGATGCACAGTTTTGGAAATGGCTACAACTAAACCTCCTTGGAGTCAGT

upper sequence: Vv16s0050g00770.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G37730.1 (Glycine max), 3'ss of exon 9
gtcagaatgttttttcttgccataaccttatctcttcatttatgacaagcttttgatagtatttcttacttctctgttcagttgttcgctcagGTTATAAGGAATTCAAATGGTTGCAACCTTGCTGTGGATATTTGGAGTCTAGGGTGCACAGTTTTGGAAATGGCCACAACAAAACCACCCTGGAGTCAGT
||   ||| |||| | |   | |    || | | |  |||| |||     | ||     | |   | | |    |       || |   ||||||||||| ||| || ||||| ||||||||||| |||||||| |||||||| || ||||| |||||||||||||| || || ||||| || |||  |||||
gttctaatattttctttaaaccttttttt-tatatatattt-tgattgcatcttagatctgtgattcagtatcattgctttctgatgattcagGTTATAAAGAACTCTAATGGATGCAACCTTGCAGTGGATATATGGAGTCTTGGATGCACGGTTTTGGAAATGGCTACTACCAAACCTCCTTGGTTTCAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatgacaagcttttgatagtatttcttacttctctgttcagttgttcgctcagGTTATAAGGAATTCAAATGGTTGCAACCTTGCTGTGGATATTTGGAGTCTAGGGTGCACAGTTTTGGAAATGGCCACAACAAAACCACCCTGGAGTCAGT
                        ttcttac  putative branch site (score: 2)
                                              ttcgctc  putative PPT
            ttttgatagtattt  TA-rich tract