Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggccttaccttcctctctctctctctctctcttatctatctatccattttttggtgatgttctaatccttgttgacctaagggtgtcttctttgtgttttagGAGTTGGATGGAGTCCACACATCTTGCCATAATGCCGAGGCTGATGAAATGTTGGTGTCCACCCCTAGTAAAACTTCAAAATTGCAGGAACTTCCTGCTT

Basic information

species Vitis vinifera
transcript Vv16s0050g00720.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110373830|gb|EC938213.1|EC938213
EST:     ATCAAATGAAGGACTCTTCTTCAAACAATGTAAATGGAGACCATAAAAAG                         GAGTTGGATGGAGTCCACACATCTTGCCATAATGCCGAGGCTGATGAAATG
genomic: ATCAAATGAAGGACTCTTCTTCAAACAATGTAAATGGAGACCATAAAAAGgttggcctta ... tgtgttttagGAGTTGGATGGAGTCCACACATCTTGCCATAATGCCGAGGCTGATGAAATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttggtgatgttctaatccttgttgacctaagggtgtcttctttgtgttttagGAGTTGGATGGAGTCCACACATCTTGCCATAATGCCGAGGCTGATGAAATGTTGGTGTCCACCCCTAGTAAAACTTCAAAATTGCAGGAACTTCCTGCTT
                                      tcttctttgtgtttt  CT-rich tract
            ttctaat  TA-rich tract