1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gcatgcttgtgtttgcttgctattgtctcagattttttttttttcccctccccttttctcctcttttccctgtcttcctcaccaaaattttcctgtgcagCCCATTGTCACGGCAAGATCTTGTGAGCTGGAAGATGGCCCTAGAGAAAAGACAGCTCCCAGAAACTGACAAAAAG
species | Vitis vinifera |
transcript | Vv16s0050g00600.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCTTTTTCAGATGAAGAAGACCAGAGTGCCTTCTATTTCTCTCCTGACAG CCCATTGTCACGGCAAGATCTTGTGAGCTGGAAGATGGCCCTAGAGEST: gi|30305216|gb|CB982010.1|CB982010
genomic: TCTTTTTCAGATGAAGAAGACCAGAGTCCCTTCTATTTCTCTCCTGACAGgtgactataa ... tcctgtgcagCCCATTGTCACGGCAAGATCTTGTGAGCTGGAAGATGGCCCTAGAG
EST: TCTTTTTCAGATGAAGAAGACCAGAGTCCCTTCTATTTCTCTCCTGACAG CCCATTGTCACGGCAAGATCTTGTGAGCTGGAAGATGGCCCTAGAGAAAAGEST: gi|161719035|gb|FC067655.1|FC067655
genomic: TCTTTTTCAGATGAAGAAGACCAGAGTCCCTTCTATTTCTCTCCTGACAGgtgactataa ... tcctgtgcagCCCATTGTCACGGCAAGATCTTGTGAGCTGGAAGATGGCCCTAGAGAAAAG
EST: TCTTTTTCAGATGAAGAAGACCAGAGTCCCTTCTATTTCTCTCCTGACAG CCCATTGTCACGGCAAGATCTTGTGAGCTGGAAGATGGCCCEST: gi|30305280|gb|CB982074.1|CB982074
genomic: TCTTTTTCAGATGAAGAAGACCAGAGTCCCTTCTATTTCTCTCCTGACAGgtgactataa ... tcctgtgcagCCCATTGTCACGGCAAGATCTTGTGAGCTGGAAGATGGCCC
EST: TCTTTTTCAGATGAAGAAGACCAGAGTCCCTTCTATTTCTCTCCTGACAG CCCATTGTCACGGCAAGATCTTGTGAGCTGGAAGATGGCCCTAGAGAAAAG
genomic: TCTTTTTCAGATGAAGAAGACCAGAGTCCCTTCTATTTCTCTCCTGACAGgtgactataa ... tcctgtgcagCCCATTGTCACGGCAAGATCTTGTGAGCTGGAAGATGGCCCTAGAGAAAAG
ccctccccttttctcctcttttccctgtcttcctcaccaaaattttcctgtgcagCCCATTGTCACGGCAAGATCTTGTGAGCTGGAAGATGGCCCTAGAGAAAAGACAGCTCCCAGAAACTGACAAAAAG
tcctcac putative branch site (score: 2)
ttttcctgt putative PPT
aaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatgcttgtgtttgcttgctattgtctcagattttttttttttcccctccccttttctcctcttttccctgtcttcctcaccaaaattttcctgtgcagCCCATTGTCACGGCAAGATCTTGTGAGCTGGAAGATGGCCCTAGAGAAAAGACAGCTCCCAGAAACTGACAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
gcatgct
- - - - - - - gcttgct
- - - - - - - - - - - -tgtctca