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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctaagtcaggaatgatgcacttctctttcttagaagattggtacaatgcactttaaatgttaccgtattgaatattcaaccactgagctcattttgcagGTCTACTTGCCATATCAGGGCTACTTCATGTCATGCAACGGCAGGCTAGCATTATCTAGTAGGACCTGAAGAATCAGTGGTACATATCATGTCTAATTGT

Basic information

species Vitis vinifera
transcript Vv16s0039g02760.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30137719|gb|CB923057.1|CB923057
EST:     TAACATCATTTATCATTTAAAGAAAAGGTGACAGATGAATGCTTAGTGAG                         GTCTACTTGCCATATCAGGGCTACTTCATGTCATGCAACGGCAGGCTAGCA
genomic: TAACATCATTTATCATTTAAAGAAAAGGTGACAGATGAATGCTTAGTGAGgtgattacta ... cattttgcagGTCTACTTGCCATATCAGGGCTACTTCATGTCATGCAACGGCAGGCTAGCA
EST: gi|30130253|gb|CB915592.1|CB915592
EST:     TAACATCATTTATCATTTAAAGAAAAGGTGACAGATGAATGCTTAGTGAG                         GTCTACTTGCCATATCAGGGCTACTTCATGTCATGCAACGGCAGGCTAGCA
genomic: TAACATCATTTATCATTTAAAGAAAAGGTGACAGATGAATGCTTAGTGAGgtgattacta ... cattttgcagGTCTACTTGCCATATCAGGGCTACTTCATGTCATGCAACGGCAGGCTAGCA
EST: gi|110383073|gb|EC947422.1|EC947422
EST:     TAACATCATTTATCATTTAAAGAAAAGGTGACAGATGAATGCTTAGTGAG                         GTCTACTTGCCATATCAGGGCTACTTCATGTCATGCAACGGCAGGCTAGCA
genomic: TAACATCATTTATCATTTAAAGAAAAGGTGACAGATGAATGCTTAGTGAGgtgattacta ... cattttgcagGTCTACTTGCCATATCAGGGCTACTTCATGTCATGCAACGGCAGGCTAGCA
EST: gi|110424023|gb|EC990376.1|EC990376
EST:     TAACATCATTTATCATTTAAAGAAAAGGTGACAGATGAATGCTTAGTGAG                         GTCTACTTGCCATATGAGGGCTACTTCATGTCATGCAACGGCAGGCTAGCA
genomic: TAACATCATTTATCATTTAAAGAAAAGGTGACAGATGAATGCTTAGTGAGgtgattacta ... cattttgcagGTCTACTTGCCATATCAGGGCTACTTCATGTCATGCAACGGCAGGCTAGCA
EST: gi|30132868|gb|CB918207.1|CB918207
EST:     TAACATCATTTATCATTTAAAGAAAAGGTGACAGATGAATGCTTAGTGAG                         GTCTACTTGCCATATCAGGGCTACTTCATGTCATGCAACGGCAGGCTAGCA
genomic: TAACATCATTTATCATTTAAAGAAAAGGTGACAGATGAATGCTTAGTGAGgtgattacta ... cattttgcagGTCTACTTGCCATATCAGGGCTACTTCATGTCATGCAACGGCAGGCTAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgcactttaaatgttaccgtattgaatattcaaccactgagctcattttgcagGTCTACTTGCCATATCAGGGCTACTTCATGTCATGCAACGGCAGGCTAGCATTATCTAGTAGGACCTGAAGAATCAGTGGTACATATCATGTCTAATTGT
                                           ctcatttt  CT-rich tract
                     tattgaatattcaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tctaagtcaggaatgatgcacttctctttcttagaagattggtacaatgcactttaaatgttaccgtattgaatattcaaccactgagctcattttgcagGTCTACTTGCCATATCAGGGCTACTTCATGTCATGCAACGGCAGGCTAGCATTATCTAGTAGGACCTGAAGAATCAGTGGTACATATCATGTCTAATTGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - gatgcac
- - - - - - - - - - - - - - - - - - - - - - caatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaacca