1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaacatagtgtttatggtgcatacttaaatgccatagaggaaagaagttggcattgatgatatattgtctctgcagATTCTATCCAAGAAGGGAGTTGTAATCCTTCCCGACATCTATGCTAATGCTGGAGGTGTGACTGTGAGCTATTTTGAGTGGGTTCAG
species | Vitis vinifera |
transcript | Vv16s0039g02750.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGTTCATAATAGAAGCAGCAAATCATCCTACTGATCCAGAAGCTGATGAG ATTCTATCCAAGAAGGGAGTTGTAATCCTTCCCGACATCTATGCTAATGCTEST: gi|30133193|gb|CB918532.1|CB918532
genomic: AGTTCATAATAGAAGCAGCAAATCATCCTACTGATCCAGAAGCTGATGAGgtaacatagt ... gtctctgcagATTCTATCCAAGAAGGGAGTTGTAATCCTTCCCGACATCTATGCTAATGCT
EST: AGTTCATAATAGAAGCAGCAAATCATCCTACTGATCCAGAAGCTGATGAG ATTCTATCCAAGAAGGGAGTTGTAATCCTTCCCGACATCTATGCTAATGCTEST: gi|37190544|gb|CF609893.1|CF609893
genomic: AGTTCATAATAGAAGCAGCAAATCATCCTACTGATCCAGAAGCTGATGAGgtaacatagt ... gtctctgcagATTCTATCCAAGAAGGGAGTTGTAATCCTTCCCGACATCTATGCTAATGCT
EST: AGTTCATAATAGAAGCAGCAAATCATCCTACTGATCCAGAAGCTGATGAG ATTCTATCCAAGAAGGGAGTTGTAATCCTTCCCGACATCTATGCTAATGCTEST: gi|30251187|gb|CB968920.1|CB968920
genomic: AGTTCATAATAGAAGCAGCAAATCATCCTACTGATCCAGAAGCTGATGAGgtaacatagt ... gtctctgcagATTCTATCCAAGAAGGGAGTTGTAATCCTTCCCGACATCTATGCTAATGCT
EST: AGTTCACAATAGAAGCAGCAAACCATCCTACTGATCCAGGAGCTGATGAG ATTTTATCCAAGAAGGGAGTTGTAATCCTTCCCGACATTTATGCTAATGCTEST: gi|156737272|gb|EV241386.1|EV241386
genomic: AGTTCATAATAGAAGCAGCAAATCATCCTACTGATCCAGAAGCTGATGAGgtaacatagt ... gtctctgcagATTCTATCCAAGAAGGGAGTTGTAATCCTTCCCGACATCTATGCTAATGCT
EST: AGTTCATAATAGAAGCAGCAAATCATCCTACTGATCCAGAAGCTGATGAG ATTCTATCCAAGAAGGGAGTTGTAATCCTTCCCGACATCTATGCTAATGCT
genomic: AGTTCATAATAGAAGCAGCAAATCATCCTACTGATCCAGAAGCTGATGAGgtaacatagt ... gtctctgcagATTCTATCCAAGAAGGGAGTTGTAATCCTTCCCGACATCTATGCTAATGCT
tacttaaatgccatagaggaaagaagttggcattgatgatatattgtctctgcagATTCTATCCAAGAAGGGAGTTGTAATCCTTCCCGACATCTATGCTAATGCTGGAGGTGTGACTGTGAGCTATTTTGAGTGGGTTCAG
cattgat putative branch site (score: 4)
ttgtctct putative PPT
attgatgatatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacatagtgtttatggtgcatacttaaatgccatagaggaaagaagttggcattgatgatatattgtctctgcagATTCTATCCAAGAAGGGAGTTGTAATCCTTCCCGACATCTATGCTAATGCTGGAGGTGTGACTGTGAGCTATTTTGAGTGGGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG