Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctacctccaatttatgaatatccatctgcttttgcttctaatgttctttgaccagtaatcttcatcttaaccaaaacactgttttgattccagTTTCAACATCATTAGCCGGGAATTCTTCTTGGCAGCAACTGTTGGCTTGTATGCCTGGATAG

Basic information

species Vitis vinifera
transcript Vv16s0039g00700.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22008389|gb|BQ793423.1|BQ793423
EST:     ATTTGCCTGTACTA                         TTTCAACATCATTAGCCGGGAATTCTTCTTGGCAGCAACTGTTGGCTTGTA
genomic: ATTTGCTTGTACTAgtaagctacc ... ttgattccagTTTCAACATCATTAGCCGGGAATTCTTCTTGGCAGCAACTGTTGGCTTGTA
EST: gi|27583660|gb|CB006355.1|CB006355
EST:     TCATGGGCATCTATTTTTTATGGATGGGGCAACCTTATTTGCTTGTACTA                         TTTCAACATCATTAGCCGGGAATTCTTCTTGGCAGCAACTGTTGGCTTGTA
genomic: TCATGGGCATCTATTTTTTATGGATGGGGCAACCTTATTTGCTTGTACTAgtaagctacc ... ttgattccagTTTCAACATCATTAGCCGGGAATTCTTCTTGGCAGCAACTGTTGGCTTGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatgttctttgaccagtaatcttcatcttaaccaaaacactgttttgattccagTTTCAACATCATTAGCCGGGAATTCTTCTTGGCAGCAACTGTTGGCTTGTATGCCTGGATAG
                                        ctgtttt  CT-rich tract
                                           ttttgatt  TA-rich tract