Sequence
atgc intronic sequence ATGC exonic sequence...tgtttgatgcatttgaaattttaatcatgatagggtttctgtactcaaatttgttcatgggtaacatggtgtttcagtttggaccttaacccttttccagGTATACTACGGCTATTGACATGTGGTCTTTTGGGTGTATAGTTGCTGAGTTGTTTCTAGGGTTGCCGCTATTTCCCGGAGCTTCAGAATTTGATCTTCTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0039g00610.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G156638_T02 (Zea mays), 3'ss of exon 5
-tgtttg-atgcatttgaaattttaatcatgatagggtttctgtactcaaatttgttcatgggtaacatggtgtttcagtttggaccttaacccttttccagGTATACTACGGCTATTGACATGTGGTCTTTTGGGTGTATAGTTGCTGAGTTGTTTCTAGGGTTGCCGCTATTTCCCGGAGCTTCAGAATTTGATCTTCTA
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ttacttacgtgtatttttcaataaagtgctgccatt-ctgctgttctggcattttcttagatgcaattgaagtagccttcttgaaccttaaca-tttaatagATATACTACCGCGATCGACATGTGGTCGTTTGGCTGCATAGTTGCTGAACTGTTTCTAGGTTTGCCATTGTTTCCTGGAGCGTCAGAATATGATGTGCTT
upper sequence: Vv16s0039g00610.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G18110.1 (Glycine max), 3'ss of exon 10
tgtttgatgcatttgaaattt-taatcatgatagg----gtttctgtactcaaatttgttcatgggtaacatggtgtttcagtttggaccttaacccttttccagGTATACTACGGCTATTGACATGTGGTCTTTTGGGTGTATAGTTGCTGAGTTGTTTCTAGGGTTGCCGCTATTTCCCGGAGCTTCAGAATTTGATCTTCTA
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tgtttcacattcttaatgcgtgtattcttcagaagttttgtttcctttttaatatttatttttgtgtact----tgcttcattttagtccttaactcttatc-agATACACAACAGCTATTGATATGTGGTCCTTTGGGTGCATAGTGGCGGAATTGTTTCTTGGATTACCATTATTCCCCGGGGCTTCAGAATTTGATCTTTTG
upper sequence: Vv16s0039g00610.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G35980.2 (Arabidopsis thaliana), 3'ss of exon 8
tgtttga-tgcatttgaaattttaatcatgatagggtttctgtactcaaatttgttcatgggtaacatggtgtttcagtttggaccttaacccttttccagGTATACTACGGCTATTGACATGTGGTCTTTTGGGTGTATAGTTGCTGAGTTGTTTCTAGGGTTGCCGCTATTTCCCGGAGCTTCAGAATTTGATCTTCTA
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aatttgactgcagactaaatttcg-ttgctattttgttcctatggtagatgctatctaaaattatcttgaagtcgtatttggaggcttaaccactgtatagATACACTACAGCTATTGACATGTGGTCTTTTGGCTGCATTGTTGCCGAGCTGTTTCTTGGATTGCCACTATTTCCAGGAGGTTCAGAATTTGATATCTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caaatttgttcatgggtaacatggtgtttcagtttggaccttaacccttttccagGTATACTACGGCTATTGACATGTGGTCTTTTGGGTGTATAGTTGCTGAGTTGTTTCTAGGGTTGCCGCTATTTCCCGGAGCTTCAGAATTTGATCTTCTA
gaccttaac putative branch site
ccttaacccttttcc CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtttgatgcatttgaaattttaatcatgatagggtttctgtactcaaatttgttcatgggtaacatggtgtttcagtttggaccttaacccttttccagGTATACTACGGCTATTGACATGTGGTCTTTTGGGTGTATAGTTGCTGAGTTGTTTCTAGGGTTGCCGCTATTTCCCGGAGCTTCAGAATTTGATCTTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - gcatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttaac