Sequence
atgc intronic sequence ATGC exonic sequence...agatatattttgcatccaatgactggatcaaattatttgcaattctctagttaaaattttctgactgaaaatgctgttgttttcatttttcatttcccagTTTAATTACAGCAGTGGACAACCTGCACCTGAAACCATCACAGACAAGATTTATGGGAACACTCTTTCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0022g02320.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G38590.1 (Glycine max), 3'ss of exon 7
agata-tattttgcatccaatgactggatcaaattatttgcaattctctagttaaaattttctgactgaaaatgctgttgttttcatttttcatt--tcccagTTTAATTACAGCAGTGGACAACCTGCACCTGAAACCATCACAGACAAGATTTATGGGAACACTCTTTCG
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-catacttttttctgtaacatgtttgtggtcaatt-tttaagactttat-gtggaaatctgtcagtccgtgtttctaataaatgtgtttgttgttgactccagTTTAATTACAGCAGTGGACAACCTGCACCAGAATCCATCACTGACAAGATTTATGGAAATACCCTGTCG
upper sequence: Vv16s0022g02320.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA20G29230.1 (Glycine max), 3'ss of exon 7
agatatattttgcatcca--atgactg-gatcaaattatttgcaattctctagttaaaattttctgactgaaaatgctgt---tgttttcatttttcatttcccagTTTAATTACAGCAGTGGACAACCTGCACCTGAAACCATCACAGACAAGATTTATGGGAACACTCTTTCG
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--atactttttttttctaacatgtttgtggtcaa--tgtctaagattttatgtgcaaatatgtcaatctgtgtttctaataaatgtctttgctgttgact--ccagTTTAATTACAGCAGCGGACAACCTGCACCAGAATCCATCACTGACAAGATTTATGGAAATACCCTGTCG
upper sequence: Vv16s0022g02320.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G51820.1 (Arabidopsis thaliana), 3'ss of exon 7
agatatattttg-catccaatgactggatcaaattatttgcaatt--ctctagttaaaattttctga---ctgaaaatgctgttgttttcatttttcatttcccagTTTAATTACAGCAGTGGACAACCTGCACCTGAAACCATCACAGACAAGATTTATGGGAACACTCTTTCG
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------atttgggtcttgaatgacaatagtatatgctttgtaagcagcttttctgtaaatttgtagaggttttataataattatctgatctttgttaaatttacagTTCAATTACAGCAGTGGTCAGCCTGCTCCTGAAACCATTACTGACAAAATATATGGAAATACACTTTCA
upper sequence: Vv16s0022g02320.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ34621 (Selaginella moellendorffii), 3'ss of exon 6
agatatattttgcatccaatgactggatcaaattatttgcaattctctagttaaaattttctgactgaaaatgctgttgttttcatttttcatttcccagTTTAATTACAGCAGTGGACAACCTGCACCTGAAACCATCACAGACAAGATTTATGGGAACACTCTTTCG
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-------------------------------gttttttgctcattaatttctctgatacgatcattgggcttctgctaactcgcatttttcgtt---cagTTCAATTATAGCAGCGGTCAGCCTGCACCTGAGGTCATAACAGACAAGATTTATGGAAACACCCAATCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctagttaaaattttctgactgaaaatgctgttgttttcatttttcatttcccagTTTAATTACAGCAGTGGACAACCTGCACCTGAAACCATCACAGACAAGATTTATGGGAACACTCTTTCG
ttctgac putative branch site (score: 2)
ttgttttcatttttca putative PPT
ttttcatttttcattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agatatattttgcatccaatgactggatcaaattatttgcaattctctagttaaaattttctgactgaaaatgctgttgttttcatttttcatttcccagTTTAATTACAGCAGTGGACAACCTGCACCTGAAACCATCACAGACAAGATTTATGGGAACACTCTTTCG
- - - - - -gcatcca
- - - - - - - - - -tgactgg
- - - - - - - - - - - - - atcaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaatg