Sequence
atgc intronic sequence ATGC exonic sequence...tcagtcaattatgtgcagtgattctgtcaactacttgacttgtgatgagtattcatatgacatgtcatttcttttttcttaattattatttttattacagGTTGAAACTGTTGCACAGTTTGGTGTTGTCTTTCTTCTTTTTGCTTTGGGGCTGGAATTTTCTTTGCCAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G32820.1 (Glycine max), 3'ss of exon 5
-tcagtcaattatgtgcagtg-attctgtcaactacttgacttgtgatgagtattcatatgacatgtcatttcttttttcttaattattatttttattacagGTTGAAACTGTTGCACAGTTTGGTGTTGTCTTTCTTCTTTTTGCTTTGGGGCTGGAATTTTCTTTGCCAAAG
| | | | | || | | |||| || | || || | | || | || || | | | | | || || | |||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||| ||||| || |||||
ttttaacgttaaacttcaatttaagctgttaattgttt--ttttaggttgttacttggttgttttgcactggataagcttattttccttcacttatatgcagGTTGAAACTGTTGCACAATTTGGTGTAGTGTTTCTTCTCTTTGCTTTGGGGCTGGAGTTTTCCCTGGCAAAG
upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G27940.1 (Glycine max), 3'ss of exon 8
tcagtcaattatgtgcagtgattctgtcaactacttgacttgtgatgagtattcatatgacatgtcatttcttt-tttcttaattattatttttattacagGTTGAAACTGTTGCACAGTTTGGTGTTGTCTTTCTTCTTTTTGCTTTGGGGCTGGAATTTTCTTTGCCAAAG
| || | | | ||| | || ||| | || || ||| ||| | | || || ||| || ||| |||||||| ||||||||||| |||||||| || |||||||| ||||||||||||||||| ||||| || |||||
gtttttaactttaaacttcaatttaagctgttaattgttcttatattgttactcaatcattttgtactggataagcttattttcctttacttgtat-gcagGTTGAGACTGTTGCACAATTTGGTGTAGTGTTTCTTCTCTTTGCTTTGGGGCTGGAGTTTTCCCTGGCAAAG
upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G51710.1 (Arabidopsis thaliana), 3'ss of exon 7
tcagtcaattatgtgcagtgattctgtcaactacttgacttgtgatgagtattca-tatgacatgtcatttcttttttcttaattattatttttattacagGTTGAAACTGTTGCACAGTTTGGTGTTGTCTTTCTTCTTTTTGCTTTGGGGCTGGAATTTTCTTTGCCAAAG
| || || | ||| || | | | | | || | | | || || ||| | || | | | | | | ||| ||||||||||| || ||||||||||||||||| || ||||| ||||||||||| ||||||| || || | |||
gtatgggtataaatgaaaggatgacgtggagccccacagtcatacggaaaaagtactctggtat-tcacattttctgtttcttcttctgatgctatggcagGTTGAAACCGTAGCACAGTTTGGTGTTGTTTTCCTTCTGTTTGCTTTGGGTTTGGAATTCTCAATGACTAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgagtattcatatgacatgtcatttcttttttcttaattattatttttattacagGTTGAAACTGTTGCACAGTTTGGTGTTGTCTTTCTTCTTTTTGCTTTGGGGCTGGAATTTTCTTTGCCAAAG
tcttaat putative branch site (score: 3)
ttattttt putative PPT
acatgtcatttctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcagtcaattatgtgcagtgattctgtcaactacttgacttgtgatgagtattcatatgacatgtcatttcttttttcttaattattatttttattacagGTTGAAACTGTTGCACAGTTTGGTGTTGTCTTTCTTCTTTTTGCTTTGGGGCTGGAATTTTCTTTGCCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - -tatgtgc
- - - - - - - - - - - - - -caactac
- - - - - - - - - - - - - - - - - -tgacttg