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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtttgagtcctctggcatgtatctgtttttccatccattactcttataaatccagctatcatattccagccatgtttttgtctagGAAGTAGAGAAACGTGGTCTTCAAGTGGCAGTTGCAGGAATCCCTAAGACAATCGACAATGACATTGCT

Basic information

species Vitis vinifera
transcript Vv16s0013g01140.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0013g01140.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G61580.1 (Arabidopsis thaliana), 3'ss of exon 6
gtgtttgagtcctctggcatgtatctgtttttccatccattactcttataaatccagctatcatattccagccatgtttttgtctagGAAGTAGAGAAACGTGGTCTTCAAGTGGCAGTTGCAGGAATCCCTAAGACAATCGACAATGACATTGCT
    ||   || | |  ||| |  |||  |    |     ||   |||  ||| |  ||   ||| |     ||| |||| ||  ||||||| ||||  ||||||||||||||||| ||| | || || ||||||||||| || ||||| ||||||
---gttatttcatatcacatattactgaatgctgaatg--tagcattagtaattctactg--atacttgcttcatatttt-gtgaagGAAGTTGAGAGGCGTGGTCTTCAAGTGGCGGTTTCTGGCATTCCTAAGACAATTGATAATGATATTGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatccattactcttataaatccagctatcatattccagccatgtttttgtctagGAAGTAGAGAAACGTGGTCTTCAAGTGGCAGTTGCAGGAATCCCTAAGACAATCGACAATGACATTGCT
                                            tttttgtct  CT-rich tract
      attactcttataaat  TA-rich tract