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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagaacttgaattgagagctaaatagagtatatctccaaaatggtcaaaccccatctcattctgttcatttctcacagAGCCCAGATGGATCAACTGTGGTATCAGCTGGTGCAGATGAGACTCTTCGCTTTTGGGAGGTTTTTGGACCACCTGTGACAGACAGTTCAAGGGTTTCGG

Basic information

species Vitis vinifera
transcript Vv16s0013g00280.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0013g00280.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G22670.1 (Glycine max), 3'ss of exon 5
------------gttagaacttgaat-tga--gagctaaatagagtatatctccaaaa-----tggtcaaaccccatctcattctgttcatttctcacagAGCCCAGATGGATCAACTGTGGTATCAGCTGGTGCAGATGAGACTCTTCGCTTTTGGGAGGTTTTTGGACCACCTGTGACAGACAGTTCAAGGGTTTCGG
            || |  |  | ||  ||   ||   || |  |   | | ||    |     |  |  ||    |    ||| |  | || | |  ||||| |||||||| | ||| ||||| |||||||| |||||||| | ||||||||||||||| || ||||| ||||||                         
cctccaactttggtcaacatataaacatggatgaaacaatttaaacttttttctggtaattatttcttcaaaattacacaatttttcttatgttttgcagAGTCCAGATGGGTTAACAGTGGTGTCAGCTGGGGCAGATGAAAGTCTTCGCTTTTGGGATGTGTTTGGGCCACCT-------------------------

upper sequence: Vv16s0013g00280.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G09620.1 (Glycine max), 3'ss of exon 6
----------------gttagaacttgaattgag--agctaaa--tagagtatatctccaaaatggtcaaaccccatctcattctgttcatttctcacagAGCCCAGATGGATCAACTGTGGTATCAGCTGGTGCAGATGAGACTCTTCGCTTTTGGGAGGTTTTTGGACCACCTGTGACAGACAGTTCAAGGGTTTCGG
                 |   ||| |||||  |   |  | ||  | ||  |       |       ||||   ||    |||||  | || | |  ||||| |||||||| | ||| ||||| |||| ||| |||||| | ||||||||||||| ||| || ||||| |||||||| |   | | |||   | | ||  
tccaaatttggtcaacatataaacatgaatgaaacaatttcaactttgaccaggcaattatttcttccaaatgacactagattcttcttatgttttgcagAGTCCAGATGGGTTAACGGTGGTGTCAGTTGGGGCAGATAAAACTCTTCGCTTTTCGGATGTATTTGGGCCACCTGTCAATAATACTTCTGAGATCTCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagagtatatctccaaaatggtcaaaccccatctcattctgttcatttctcacagAGCCCAGATGGATCAACTGTGGTATCAGCTGGTGCAGATGAGACTCTTCGCTTTTGGGAGGTTTTTGGACCACCTGTGACAGACAGTTCAAGGGTTTCGG
                                    ttctgttcatttctc  CT-rich tract
     tatatct  TA-rich tract