1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttttccacaagttcctcactttattacaatcctgaaattcagagtctggaacaagattgcctcacatttaattctactgaccaaactgtgcatgagcagGAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCTGGTCAGAGTGCTAGTAGTAGTTTATGCAACGGTGTGGTAAGTCATCTTA
species | Vitis vinifera |
transcript | Vv15s0048g02540.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGG GAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCTEST: gi|30323643|gb|CD006905.1|CD006905
genomic: CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGGgtaagatttg ... gcatgagcagGAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCT
EST: CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGN GAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCTEST: gi|110687475|gb|EE064923.1|EE064923
genomic: CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGGgtaagatttg ... gcatgagcagGAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCT
EST: CAGGGGCAGCATTTCCCACCTCTCTACTTGGCCTAATTCCTGTTCAAGGG GAGAACTATTTGNAACCTATGGAGGAEST: gi|30325922|gb|CD009184.1|CD009184
genomic: CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGGgtaagatttg ... gcatgagcagGAGAACAATTTGGAACCTATGGAGGA
EST: CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGG GAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCTEST: gi|32247880|gb|CD713699.1|CD713699
genomic: CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGGgtaagatttg ... gcatgagcagGAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCT
EST: CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGG GAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCTEST: gi|34546174|gb|CF514406.1|CF514406
genomic: CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGGgtaagatttg ... gcatgagcagGAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCT
EST: CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGG GAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCTEST: gi|30327031|gb|CD010293.1|CD010293
genomic: CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGGgtaagatttg ... gcatgagcagGAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCT
EST: CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGG GAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCTEST: gi|34545179|gb|CF513411.1|CF513411
genomic: CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGGgtaagatttg ... gcatgagcagGAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCT
EST: CAACTTGGCCTAATTCCTGTCCAAGGG GAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCTEST: gi|32271922|gb|CD721081.1|CD721081
genomic: CAACTTGGCCTAATTCCTGTCCAAGGGgtaagatttg ... gcatgagcagGAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCT
EST: CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGG GAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCTEST: gi|32248937|gb|CD714756.1|CD714756
genomic: CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGGgtaagatttg ... gcatgagcagGAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCT
EST: CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGG GAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCT
genomic: CAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGGgtaagatttg ... gcatgagcagGAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCT
tctggaacaagattgcctcacatttaattctactgaccaaactgtgcatgagcagGAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCTGGTCAGAGTGCTAGTAGTAGTTTATGCAACGGTGTGGTAAGTCATCTTA
tactgac putative branch site (score: 1)
atttaattcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttccacaagttcctcactttattacaatcctgaaattcagagtctggaacaagattgcctcacatttaattctactgaccaaactgtgcatgagcagGAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCTGGTCAGAGTGCTAGTAGTAGTTTATGCAACGGTGTGGTAAGTCATCTTA
- - -ccacaag
- - - - - - -tcctcac
- - - - - - - - - - - - - -caatcct
- - - - - - - - - - - - - - - - - - - - - - - - ggaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaaact