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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttattatcttccttggaatttttcaacactaatttgctatagcaggttttgaacttcatttgcctgatggtagGTGCCAGGTGAACCAAACATATCATATATTTGCTCAAGGTATTATAGGGCTCCAGAACTGATCTTTGGGGCTACAGAATATACAACTGCCATTGATATGT

Basic information

species Vitis vinifera
transcript Vv15s0048g02010.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g02010.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os10g37740.1 (Oryza sativa), 3'ss of exon 7
gtatgtttattatcttccttggaatttttcaacactaatttgctatagcaggttttgaacttcatttgcctgatggtagGTGCCAGGTGAACCAAACATATCATATATTTGCTCAAGGTATTATAGGGCTCCAGAACTGATCTTTGGGGCTACAGAATATACAACTGCCATTGATATGT
||||| || || || | || | |   | |  |  ||   ||||    | |  |||   | | ||    |   ||   |||| || |||||||| ||||||||||| ||||||||  |||||||||||||||| ||||| || ||||| |||||||| ||||| || || |||||||| |
gtatgcttcttgtcctgctagca---tgttgattctgtgttgcacatgta--tttgacaatgcagacactccatttcagGTTCCTGGTGAACCTAACATATCATACATTTGCTCGCGGTATTATAGGGCTCCTGAACTAATATTTGGAGCTACAGAGTATACCACAGCAATTGATATCT

upper sequence: Vv15s0048g02010.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G131853_T01 (Zea mays), 3'ss of exon 7
gtatgtttattatcttccttggaatttttcaacactaatttgctatagcaggttttgaacttcatttgcctgatggtagGTGCCAGGTGAACCAAACATATCATATATTTGCTCAAGGTATTATAGGGCTCCAGAACTGATCTTTGGGGCTACAGAATATACAACTGCCATTGATATGT
    || || | |||  |||  | ||| |     || | |  ||  |     ||   ||  | |  |  |  ||   |||| || ||||| || |||||||| || ||||||||  |||||||||||||||| ||||| || ||||| ||||| || ||||| ||||| || ||||| |
----gtatact-tctctcttttagtttgtttctgctgaatatcttcatggatttaataaagtaaaatatcc-atttcagGTCCCTGGTGAGCCTAACATATCGTACATTTGCTCGCGGTATTATAGGGCTCCTGAACTAATATTTGGAGCTACGGAGTATACCACTGCGATCGATATCT

upper sequence: Vv15s0048g02010.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G109624_T01 (Zea mays), 3'ss of exon 7
gtatgtttattatcttccttggaatttttcaacactaatttgctatagcaggttttgaacttcatttgcctgatggtagGTGCCAGGTGAACCAAACATATCATATATTTGCTCAAGGTATTATAGGGCTCCAGAACTGATCTTTGGGGCTACAGAATATACAACTGCCATTGATATGT
    ||  | | |||  |||  | ||| |      | | |  ||  |     ||   ||  | |  |  |  ||   |||| || ||||| || |||||||| || ||||||||  |||||||||||||||| ||||| || ||||| ||||| || ||||| ||||| || ||||| |
----gtacact-tctctcttttagtttgttcctgttgaatatcttcatggatttaataaagtaaaatatcc-atttcagGTCCCTGGTGAGCCTAACATATCGTACATTTGCTCGCGGTATTATAGGGCTCCTGAACTAATATTTGGAGCTACGGAGTATACCACTGCAATCGATATCT

upper sequence: Vv15s0048g02010.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G40150.1 (Glycine max), 3'ss of exon 7
gtatgtttattatcttccttggaatttttcaacactaatttgctatagcaggtt----ttgaactt--cat-ttgcctgatggtagGTGCCAGGTGAACCAAACATATCATATATTTGCTCAAGGTATTATAGGGCTCCAGAACTGATCTTTGGGGCTACAGAATATACAACTGCCATTGATATGT
||| ||||||| || |  ||     || ||||    ||  |  || |  || ||     ||| |||   || ||         |||||||| || ||||| |||||||| ||||| |||||  |||||||||| ||||||||||| || ||||| || |||||||| |||||||| |||||||| |
gtaagtttattttcgtttttc---cttatcaatttgaaagttgtacaatagtttgtgcctgagcttgtgatattattgtgctatagGTGCCTGGCGAACCCAACATATCGTATATATGCTCGCGGTATTATAGAGCTCCAGAACTTATATTTGGTGCAACAGAATACACAACTGCTATTGATATTT

upper sequence: Vv15s0048g02010.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G01850.1 (Glycine max), 3'ss of exon 7
----gtatgtttattatcttccttggaatttttcaacactaatttgctatagcaggttttgaacttcatttgcctgatgg-----tagGTGCCAGGTGAACCAAACATATCATATATTTGCTCAAGGTATTATAGGGCTCCAGAACTGATCTTTGGGGCTACAGAATATACAACTGCCATTGATATGT
    ||   ||||   |||   || ||| |||| || | || ||||  || | | | |      || ||   | |  ||       |||| || |||||||| |||||||| || ||||||||  | |||||||| ||||||||||| || |||||||| || ||||| |||||||| ||||||||||
gtgagttcctttaccttctgaatttgaacttttgaaga-tattttg--attgtatgctcctgggtttatgatcttattgcattttcagGTTCCCGGTGAACCCAACATATCGTACATTTGCTCTCGATATTATAGAGCTCCAGAACTTATATTTGGGGCAACTGAATACACAACTGCTATTGATATGT

upper sequence: Vv15s0048g02010.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G08320.1 (Glycine max), 3'ss of exon 7
----gtatgtttattatcttccttggaatttttcaacactaatttgctatagcaggttttgaacttcatttgcctga--tggtagGTGCCAGGTGAACCAAACATATCATATATTTGCTCAAGGTATTATAGGGCTCCAGAACTGATCTTTGGGGCTACAGAATATACAACTGCCATTGATATGT
    ||   ||||   |||   || ||| |||| || |    ||     ||      |  |    | || ||  ||   |   |||| || |||||||| |||||||| || ||||||||  | |||||||| ||||||||||| || ||||||||||| ||||| |||| ||| ||||||||||
gtaagttcctttaccttctgaatttgaacttttgaagatattttgatcgtatgctcctgcgtttatgatatgattgcattttcagGTTCCTGGTGAACCCAACATATCGTACATTTGCTCTCGATATTATAGAGCTCCAGAACTTATATTTGGGGCTACTGAATACACAATTGCTATTGATATGT

upper sequence: Vv15s0048g02010.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G45960.1 (Glycine max), 3'ss of exon 7
---gtatgtttattatcttccttggaatttttcaacactaatttgctatagcaggt-tttgaacttc--at-ttgcctgatggtagGTGCCAGGTGAACCAAACATATCATATATTTGCTCAAGGTATTATAGGGCTCCAGAACTGATCTTTGGGGCTACAGAATATACAACTGCCATTGATATGT-
   || ||||| || | || | | |    ||| ||   |    | | | ||   || | ||| |||   || ||         |||||||| || ||||| |||||||| || || |||||  |||||||||| ||||||||||| || ||||| || |||||||| |||||||| |||||||| | 
taagtttgttttttgtttttccttgtcactttgaaagttg---tacaacagtttgtgtctgagcttgtgatattattgtgctttaggTGCCTGGCGAACCCAACATATCGTACATATGCTCGCGGTATTATAGAGCTCCAGAACTTATATTTGGTGCAACAGAATACACAACTGCTATTGATATTTG

upper sequence: Vv15s0048g02010.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT3G61160.2 (Arabidopsis thaliana), 3'ss of exon 7
gtatgtttattatcttccttggaatttttcaacactaatttgctata---gcaggttttgaacttcatttgcctgatggt---agGTGCCAGGTGAACCAAACATATCATATATTTGCTCAAGGTATTATAGGGCTCCAGAACTGATCTTTGGGGCTACAGAATATACAACTGCCATTGATATGT
||||||||  || ||      |   ||||||    |  |||| ||||   | |     |||       |  | || ||||   || | ||||| |||||||| ||||| || || |||||||||||||| || ||||| ||||| || ||||| || || ||||| |||| ||| || |||||||
gtatgtttcatagctcttaatgggattttcaggggttgtttgttatatatgaaaacaatgagtagtgatgtcttgttggtttcagATTCCAGGAGAACCAAATATATCTTACATATGCTCAAGGTATTACAGAGCTCCTGAACTCATATTTGGAGCAACCGAATACACAAGTGCGATCGATATGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349820373|gb|FQ403989.1|FQ403989
EST:     CCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAGAAGTTG                         GTGCCAGGTGAACCAAACATATCATATATTTGCTCAAGGTATTATAGGGCT
genomic: CCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAGAAGTTGgtatgtttat ... ctgatggtagGTGCCAGGTGAACCAAACATATCATATATTTGCTCAAGGTATTATAGGGCT
EST: gi|110688693|gb|EE067533.1|EE067533
EST:     CCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAGAAGTTG                         GTGCCAGGTGAACCAAACATATCATATATTTGCTCAAGGTATTATAGGGCT
genomic: CCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAGAAGTTGgtatgtttat ... ctgatggtagGTGCCAGGTGAACCAAACATATCATATATTTGCTCAAGGTATTATAGGGCT
EST: gi|32249937|gb|CD715756.1|CD715756
EST:     CCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAGAAGTTG                         GTGCCAGGTGAACCAAACATATCATATATTTGCTCAAGGTATTATAGGGCT
genomic: CCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAGAAGTTGgtatgtttat ... ctgatggtagGTGCCAGGTGAACCAAACATATCATATATTTGCTCAAGGTATTATAGGGCT
EST: gi|161713339|gb|FC063356.1|FC063356
EST:     CCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAGAAGTGG                         GTGCCAGGTGAACCAAACAT
genomic: CCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAGAAGTTGgtatgtttat ... ctgatggtagGTGCCAGGTGAACCAAACAT
EST: gi|71856597|gb|DT005652.1|DT005652
EST:     CCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAGAAGTTG                         GTGCCAGGTGAACCAAACATATCATATATTTGCTCAAGGTATTATAGGGCT
genomic: CCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAGAAGTTGgtatgtttat ... ctgatggtagGTGCCAGGTGAACCAAACATATCATATATTTGCTCAAGGTATTATAGGGCT
EST: gi|110732276|gb|EE107431.1|EE107431
EST:     CCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAGAAGTTG                         GTGCCAGGTGAACCAAACATATCATATATTTGCTCAAGGTATTATAGGGCT
genomic: CCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAGAAGTTGgtatgtttat ... ctgatggtagGTGCCAGGTGAACCAAACATATCATATATTTGCTCAAGGTATTATAGGGCT
EST: gi|27579903|gb|CB002598.1|CB002598
EST:     CCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAGAAGTTG                         GTGCCAGGTGAACCAAACATATCATATATTTGCTCAAGGTATTATAGGGCT
genomic: CCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAGAAGTTGgtatgtttat ... ctgatggtagGTGCCAGGTGAACCAAACATATCATATATTTGCTCAAGGTATTATAGGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttcaacactaatttgctatagcaggttttgaacttcatttgcctgatggtagGTGCCAGGTGAACCAAACATATCATATATTTGCTCAAGGTATTATAGGGCTCCAGAACTGATCTTTGGGGCTACAGAATATACAACTGCCATTGATATGT
                                        tttgcct  CT-rich tract
         actaattt  TA-rich tract